KEGG   Larimichthys crocea (large yellow croaker): 104939299Help
Entry
104939299         CDS       T04659                                 

Gene name
hdac6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  
histone deacetylase 6 [EC:3.5.1.98]
Organism
lco  Larimichthys crocea (large yellow croaker)
Brite
Enzymes [BR:lco01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     104939299 (hdac6)
Protein phosphatases and associated proteins [BR:lco01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     104939299 (hdac6)
Messenger RNA biogenesis [BR:lco03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     104939299 (hdac6)
Membrane trafficking [BR:lco04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    104939299 (hdac6)
Chromosome [BR:lco03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     104939299 (hdac6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
LinkDB All DBs
Position
Un
AA seq 921 aa AA seqDB search
MERSREEEEEMNDRLKKLDLSSRSAATGTGLVYSKVFTHHKNLWDPSHPECPDRVTSIME
ELDRQELLSHCITVEPREASEEELLLGHMKHVDLMKSTQTMTQSELQTLSEKYDSVYIHP
ESFQVSVLAVGSVLQLVDRVVTSELRNGFAIIRPPGHHAQCNEANGFSIFNNVAIAARYA
RTRHSVSRVLIVDWDVHHGQGVQYLFQEDPSVMYFSVHRYEGGSFWPHLPESDSQFVGSG
RAEGRNINLPWNKTGMTDADYITAFQQLLLPVAHEFQPQLVLVCAGFDAAVGDPKGDMRV
SPQCFHVLTHMLMSLAEGRLVLALEGGYDLQSTAEGAAACVRALLGGACPPLTPPTAPSD
SALQSVSQTISALYPHWACLQILEGVSLAKGSVIRETNKQSAKQSSPARYVATTTGLVYD
ERMMEHMNMWDRHHPEQPQRIFKIFSKHQQLGLVDRCQRIPARLATEEELSRCHSVQHIE
QMKSTAVMKPRDLHKLGVEFNSIYINNQSYRSALLAAGGCFNAVESILTGQVSNGVAIVR
PPGHHAERDSPCGFCFFNTAALAARHAQNISHDAPLRVLILDWDVHHGNGTQHMFEDDDS
VLYVSLHRYDNGMFFPSSEDAAPDRVGVSKGAGFNVNVAWNGGRMGDSDYLAAFHHVVMP
IATEFDPGLVLVSAGFDAARGDPLGGYHVTPEGYAHLTHQLMSLAGGRVLLILEGGYNLT
SISDSMAMCTSVLQGDPPPSLVTPLPPPHHSAVATINEVIRHHAPYWRSLRIHIPECVRA
SLPALKHRGKRSSKGKGRKSDKPPLPPTGQEAHSLEQLTQGLASLDISQISASHTPATST
AVGGARPKVRLSPEKVTCGGEVTLGQSQSAESMELQTQTVVVAASESVAAGEKCTSEGGA
EPETEGACGWSKRQTSLELMC
NT seq 2764 nt NT seq  +upstreamnt  +downstreamnt
atggagaggagcagagaagaagaggaggagatgaacgacagactgaagaagctggatctg
tccagtcgatcagcagctactggaactggtctggtttactccaaggtcttcacccaccac
aagaacctgtgggaccccagtcacccagagtgtccggaccgagtgacgtccatcatggag
gagttggacagacaggagctgctgtctcactgcatcacagtggagcccagagaagcttca
gaagaagagctgctgctcggtcacatgaaacatgtggatttgatgaagtcgactcagacg
atgacgcagagtgaactccaaactctgtctgagaaatacgactcagtttacattcatcct
gagtctttccaggtgagtgtgttggcggtgggttcagttctccagctggttgatcgggtt
gtgacctctgaactcaggaacggatttgccatcatcagacctccaggtcatcacgctcag
tgtaacgaggcgaatggtttcagcatcttcaacaacgtggcaatcgcagctcgatacgct
cggaccagacactcagtcagcagggtgctgattgtggactgggacgttcatcatggtcag
ggtgtccagtatctgttccaggaagaccccagcgtcatgtacttcagtgtccacaggtat
gagggcgggtctttctggccccacctcccagagtcggacagccagtttgtcggcagtgga
cgagctgaaggcagaaacatcaacctgccctggaacaagaccggaatgacagacgctgat
tacatcacagcttttcaacaactgctgcttcctgtagctcatgagtttcagcctcagctg
gttctggtctgtgctggatttgatgctgcagtcggagatccaaagggggacatgcgtgtc
agtcctcagtgtttccatgttctcactcacatgttgatgagtttggctgaaggtcgactt
gttctcgccctcgagggaggttatgacctgcagtcgacagcagagggcgctgctgcctgt
gtcagagctctgctgggaggagcctgtcctcctctgactccgcccaccgccccatctgac
agtgctttgcagtctgtctctcagaccatctcagctttgtatccacactgggcgtgtcta
cagattctggaaggtgtctcattggccaaggggagtgtcatcagagaaaccaataagcag
agtgctaagcaatctagccccgcccgttatgttgctacgacaacaggtctggtttatgat
gagcggatgatggagcacatgaacatgtgggacagacatcatcctgagcagcctcagagg
atctttaaaatcttctccaaacatcaacagctgggattggtcgatcgttgccagcggata
ccagctcgcttagcaacagaggaggagctgtccaggtgtcacagtgtgcagcacatcgag
cagatgaagagcacggcggtgatgaagcccagagatttacacaaacttggagtcgagttc
aactcgatctacatcaacaaccagagctacaggagcgctctgctcgctgctggaggctgc
ttcaacgccgtggagagcatcctcacaggacaggtgagtaacggcgtggcgatcgtccgt
cctcctggtcatcacgcagagagagattctccgtgcggtttctgcttcttcaacacggca
gcgctcgccgctcgccacgcccaaaacatctcccatgatgcaccgctgcgcgttctcatc
ctggactgggatgttcaccatggcaacgggacgcagcacatgtttgaggatgacgacagc
gtcctgtatgtctccctccatcgctatgacaacgggatgttcttcccgtcctcagaggac
gccgcccccgacagggtgggcgtgtccaagggggcggggtttaacgtcaatgtagcgtgg
aatggagggcggatgggcgactctgactacctcgccgcctttcaccacgtggtcatgccg
atcgccaccgagtttgaccctggtctggtgctggtgtcagccgggttcgatgcggctcgg
ggggatccgctgggcggatatcatgtgaccccggagggatacgcccacctcacacaccag
ctgatgtcactagcaggggggcgtgtcctactcatactggagggaggttataacttaaca
tccatctctgactccatggcgatgtgcaccagcgtgttgcaaggagacccccctccctcc
ttagtgacacccctcccccctcctcatcacagcgccgtagcaacaatcaacgaggtcatc
agacaccacgccccctactggaggtcactgaggatccacatcccagagtgtgtgcgggcg
tccctgcccgccctgaagcatcgtgggaaacgtagttctaaaggaaaaggcaggaagtcg
gacaaaccaccgctgcctcctacaggacaggaggcgcacagcctggagcagctcacgcag
ggattggccagtttggacatcagtcaaatctcagccagtcacacgcctgccacgtccaca
gcagtgggtggggccaggccgaaggtccgcctcagcccggagaaggtcacctgtggaggt
gaagtgacacttgggcagagccaatcagcagagagcatggagctgcagacccagacggtt
gtcgtggcagcgtcagagtcggttgccgctggagagaaatgtacaagtgaagggggggcg
gagccagagacagagggagcgtgtggttggtcaaagcgtcagacgtctctggagctgatg
tgtg

DBGET integrated database retrieval system