KEGG   Larimichthys crocea (large yellow croaker): 109136710Help
Entry
109136710         CDS       T04659                                 

Definition
(RefSeq) DNA ligase 3-like
  KO
K10776  
DNA ligase 3 [EC:6.5.1.1]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
Base excision repair
Module
BER complex
Brite
KEGG Orthology (KO) [BR:lco00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    109136710
Enzymes [BR:lco01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     109136710
DNA repair and recombination proteins [BR:lco03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     109136710
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
LinkDB All DBs
Position
Un
AA seq 996 aa AA seqDB search
MQRPLVFLAYKTVCVGLQPPGIIVGCQQLPKLCRAFSAVHVLNFSRQIHHFSLVSNTHRL
LQVDPPQLSLHQRFSSPPDMSEQRFIVEYAKRGTAGCKKCKDKIAKGIVRIGKIVPNPFS
ESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEEMQDEDKELINKHVSDLMAKV
NASPKKKVQAKLNTTGQLMAPPADPSVNAPRKFSGFTATKAGSSSSSPGPSSSPAKASQG
STLSAQLCDPQHKDCLLREFRKLCAMVAENNSYNVKTQIIEKFLRKGSGGDKFHGDLYLT
VKLLLPGVVKSVYNLNDKQIVKLFSRIFRCNQDDMVRDLEQGDVSETVRMFFEESKSFPA
AAKSLLTIQEVDAFLTRLAQLTKEDEQQTELENIAKKCTGNDLKCIIRLIKHDLKMNSGA
KHVLDAVDPNAYDAFKASRNLGDVIDRVLRNQQEASNGSGPRKLLTVEASLMTPVQPMLA
EACKSVEYAMKKCPNGMYSEIKYDGERVQVHKNGDSFSYFSRSLKPVLPHKVAHFKDYIP
QAFPGGHSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDANVCLFVFDCIFFNGVSLM
ERPLCERRKFMHDNMVEVPNRILFSEMKHVTRAADLADMITRVIREGLEGLVLKDVRGGY
EPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSKKWCTV
TKCSGGYDDATLARLQKELDVIKISKEPSKIPGWLKIIKNYYPDFIIRNPEEAPVWEITG
AEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLKELFRISKENSDFKVTAGPSD
EKGSSGGDSGGNSPSPSSRGSAPPKKTNSRSTPKPKVVKSEPRSPGPEAPSAKKVKNVHS
NGQSKAKATSQLLEPRNDKTLLDIFSGVKLFLPDSVQDYDKLRRYFVAYDGDLVADYDTA
SATHTLAEPEEDGQAQKVSPSWIWECIRKRRVVPPC
NT seq 2991 nt NT seq  +upstreamnt  +downstreamnt
atgcagagaccacttgtttttttagcatacaagactgtctgtgtaggcctacaacctcct
ggaataattgtcgggtgtcagcaactccctaaactgtgtagagccttttcagctgttcat
gtgttaaatttttcccggcaaatccatcacttctccttggtatccaatacacacagactc
ctccaagtcgatcctccccagctttctctacatcagcgtttctccagcccgccagacatg
tcagaacaaaggttcatcgttgagtacgccaaacgtggcactgctggatgtaagaaatgc
aaagacaaaatcgcaaagggcatagtacgcataggcaagatcgtgcccaaccctttcagc
gagtctgcaggggagatgaaagagtggtaccatgtgaagtgtatatttgagaagctggaa
agggcgagagccaccacgaagaagattgaggacatcacagatctggagggctgggaggag
atgcaggatgaagacaaggagctcattaataaacatgtttcagacctgatggctaaagtc
aatgcaagtccaaagaagaaggtgcaggccaagttgaacaccaccggccagctaatggcc
cctcctgcggacccatctgtcaatgctccacgcaagttctcaggcttcactgctacaaag
gccggcagctccagctccagcccggggccgtcctcctcacctgccaaagccagccaaggc
agcaccttgtccgctcagctttgtgacccccagcacaaggactgcctcctgcgagagttt
cgcaagctctgcgccatggtggcagaaaacaacagctacaatgtcaagacacagatcatt
gaaaagttcctcaggaagggctccggtggagataagttccatggagatctttatctgacg
gtaaagctgctcctgccaggcgtcgtaaaaagtgtctacaacctcaacgacaagcagatc
gtgaaactcttcagtcgcatattcagatgcaaccaggatgacatggtgcgcgatctggag
cagggcgatgtgtctgagacggtgaggatgttcttcgaggagagtaaatcattcccagcg
gctgccaagagcctcctgaccatccaggaagtggatgccttcctgacccgccttgcccag
ctgacgaaggaggatgagcagcagaccgagctggagaatattgccaaaaagtgcaccggt
aatgacctgaaatgcatcattcgacttattaaacatgacctgaagatgaattccggagca
aaacacgtcttggatgctgtggatccaaatgcgtacgatgccttcaaggcctcgcgtaat
ctgggcgacgtgattgatagggtgttgaggaatcagcaggaggcgtctaatggatcggga
cccaggaaactcctcactgtggaggcctcactcatgacccccgttcagccaatgttggca
gaggcgtgtaaatccgtcgagtacgccatgaagaaatgccccaacgggatgtactctgag
atcaagtacgatggagaacgtgtgcaggtccacaagaatggagacagcttcagctacttc
agccgcagcctcaagccggtgctgccacacaaagttgcccatttcaaggactacattcct
caggcttttcccggaggtcacagtatgatattggatgctgaagtcctcctaattgacaca
aacacaagtaaacccctgccctttgggaccctgggtgtccacaagaaagcagcttttcag
gatgccaacgtgtgcctttttgttttcgactgtatcttcttcaatggcgtgagcctcatg
gagaggcctctgtgtgaacgcaggaagttcatgcatgacaacatggttgaagtccccaac
aggatcctgttctcagagatgaagcacgtcactagggcagcagatctggctgatatgata
actcgtgtcatcagagagggacttgaaggcctggtgcttaaagacgtaaggggcggctac
gaaccgggaaagcgtcactggctgaaggtgaagaaggactacctgaacgaaggggcgatg
gcagacacagctgacctcgtggttcttggggccttttatggaaaaggctcaaacgggggc
atcatgtccagttttctaatgggctgttatgacccagactccaagaaatggtgcacagtc
accaagtgctccggaggctacgatgacgccaccttggccaggctccaaaaagagctggat
gtgatcaaaatcagcaaggagccaagcaaaatcccaggctggttgaaaatcatcaagaac
tattatccagatttcattattcgcaatcctgaggaagcacctgtctgggagatcacaggc
gctgagttttccaaatcagaaatgcacacggctgatggcatctccatccgctttccccgc
atgacacgcatccgtgatgacaaggactggaagactgccaccaacttgcaccagcttaaa
gagctgtttcgcatatcaaaggagaacagcgactttaaagtgacagctggaccttccgac
gagaagggctcgtcaggaggggacagcggagggaactccccgtcgccctcgtcccgtgga
agcgctccacccaagaagaccaacagcagaagcacacccaaaccaaaggtggtgaaatcg
gagcctcgcagtccaggcccagaagcacccagtgccaagaaggtgaaaaatgttcacagc
aacggacaaagcaaagcaaaggcaacctctcaactgctggagccaaggaacgacaagacg
ctgctggacatcttcagtggggtgaagcttttcctgccggactctgtacaggactatgac
aaactgaggcgctactttgtggcgtacgacggagacctcgtagcggactatgacaccgcc
tcagccacacatacgctggctgaacctgaagaggacggccaagcccagaaagtctcaccc
agctggatctgggagtgtatccgcaagaggcgtgtcgtacctccctgttaa

DBGET integrated database retrieval system