Lysobacter capsici: LC55x_5021
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Entry
LC55x_5021 CDS
T04162
Name
(GenBank) conserved repeat domain protein
Organism
lcp
Lysobacter capsici
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpaA_2
DUF11
OmpA
NPCBM_assoc
SpaA
Motif
Other DBs
NCBI-ProteinID:
ALN88268
UniProt:
A0A0S2FX25
LinkDB
All DBs
Position
complement(5565449..5574412)
Genome browser
AA seq
2987 aa
AA seq
DB search
MTNTGTSCNNPGQTFSGGVCTSEDSDPIQPRLTLIKTVTNNNGGAAVATAWTLTATGPSN
ISGVTGTPAVTAASVNVGTYTLSETGGPAGYTAGTYSCVLNGGAAVVANSITLAAGDNAT
CTINNDDQAATLTLVKTVTNDNGGTAVATAWTLQAAGPTNITGATGSAAVTNASVNPGSY
TLSETGGPAGYTAGTYSCVINGGAAVVNNTVALAAGDNATCTINNDDQAATLTLVKTVTN
DNGGAAVATAWTLAATGPTNITGATGSAAVTNAPVNPGSYALSETGGPAGYTAGTYSCVI
NGGAAVVNNTVALAAGDNATCTINNDDQAATLTLVKTVINDNRGTATTADFTLTATGPTS
ISGTSGAPAVTDAVVSSGTYTLTETNLAGYAAGAWSCTGGTLTGNSLVLSNGDDAECSIT
NDDIAGPEVSSSKSSDPATGTTVNPGATITYTLSTTVTTAALTSVYTLTDTISGDQTFGS
VTNAGSYTCTGTGPLSCTLPAGTLPGTYTLTYTTTVDVDAAGTVGNSVTGTGGGDPDPEC
TNCTTTHTVAAPVISSIKSSDPATGSTVNPGATITYTLSTTISTAALTSVYTLTDTISGD
QTFGSVTNAGSYTCTGTGPLSCTLPAGTLPGTYTLTYTTTVDADAAGTVGNSVTGTGGGD
PDPECTNCTTTHTVAAPVISSSKSSDPATGSTVNPGATITYTLSTTISTAALTSVYTLTD
TISGDQTFAAITAPGAYTCTGTGPVVCTLPVGTAPGTYTLTYTTTVDADAAGTVGNSVTG
TGGGDPDPECTNCTTTHPVAAPVISSSKSSDPATGTTVNPGATITYTLSTTVTTAALTSV
YTLTDTISGDQTFGSVTNAGSYTCTGTGPLSCTLPAGTLPGTYTLTYTTTVDADAAGTVG
NSVTGTGGGDPDPECTNCTTTHTVAAPVISSSKSSDPATGTTVNPGATITYTLSTTISTA
ALTSIYTLTDTISGDQTFGSVTNAGNYTCTGTGPLSCTLPAGTLPGTYTLTYTTTVDADA
AGTVGNSVTGTGGGDPDPECTNCTTTHPVAAPVISSSKSSDPATGTTVNPGATITYTLST
TVTTAALTSVYTLTDTISGDQTFGSVTNAGSYTCTGTGPLSCTLPAGTLPGTYTLTYTTT
VDADAAGTVGNSVTGTGGGDPDPECTNCTTTHPIAAPVISSSKSSDPATGTTVDPGATIT
YTLSTTISTAALTSIYTLTDTISGDQTFGSVTNAGSYTCTGALSCTLPAGTLPGTYTLTY
TTTVDADSAGTVGNSVTGSGGGDPDPECTNCTTTHTVAAPVISSSKSSDPATGTTVNPGA
TITYTLSTTIGTAALTSVYTLTDTISGDQTFAAITAPGAYTCTGTGPLSCTLPAGTLPGT
YTLTYTTIVDADAAGTVGNSVTGSGGGDPDPECTNCATTHPVAAPVIASSKSSDPATGTT
VNPGATITYTLSTTVTTAALTSVYTLTDTISGDQTFGSVTNAGSYTCTGTGPLSCTLPAG
TLPGTYTLTYTTTVDADAAGTVGNSVTGSGGGDPDPECTNCTTTHPVAAPVISSSKSSDP
ATGTTVNPGATITYTLSTTVTTAALTSVYTLTDTISGDQTFGSVTNAGSYTCTGTGPLSC
TLPAGTLPGTYTLTYTTTVDADAAGTVGNSVTGTGGGDPDPECTNCTTTHTVAAPVIASS
KSSDPATGTTVNPGATITYTLSTTISTAALTSVYTLTDTISGDQTFGSVTNAGSYTCTGT
GPLSCTLPAGTLPGTYTLTYTTTVDADAAGTVGNSVTGSGGGDPDPECTNCATTHPVAAP
VIASSKSSDPATGTTVNPGATITYTLSTTVTTAALTSVYTLTDTISGDQTFAAITAPGAY
TCTGTGPVVCTLPAGTAPGTYAVSYTTTINADASGTVGNSVVGNGGGDPDPECTSCTTTH
PVLVNPALTITKTAGAPTTNLGANASVTDAGDTIGYTFVITNTGNVNLTNVVVNDAKLDA
PAACNATTLAPNASTTCTGTHTITQEEVNAGTSDNTATATGTSPNATQVTSGPASTQTPL
PRNGELRSTKAMSGNADEDGSGSVTVGDTLSYTITVTNIGNIDLGNVVVTDDKITPNTTT
CAIVVPGATCVLTGTYRVTPADANAGTIRNAATVVDTPPPGGQPVCPVGSADPKCNPRVD
VPVTQMPNLTSAKAMTANADEDGDGRVSVGDTLTYTVTATNTGNIDLTDVVVSDDKITPN
SITCATVAPTGTCVLTGTYKLAQADADNGSVVNTATVSTSTPNVCPAGSTEARCHPTVTV
PIEARPAVAIVKVATLTVDEGKQGVGNAGDVITYAVRITNTGNVTLNDMATSDVLENYPA
TTLSCGATSLAPGASTDCNAYTHTITREEANAGGTLDNMVKVTARYGNLGGGGTATGTAT
ADATAIVPVEPEASSDLFVTKQANPRDVKIGDLVRYTLTIKNVGQVDTIDATLTDTPPAG
FTLVEGSVQVADRDGGGRQVGSYPIKVDQIDIKAGESATVMYLLRVGAGVRPGTHVNRAY
AEDGDVRSNEATAEVQLIADPLLDESLLLGTVFDDRDGDGWQDSADLSRVRVQGGFAADA
YIANSTTVDRGDGAKPEPDASSPMLHGIDLGKISARQSEADPVADHRVVISQSLREPKFD
DGFALTTAQGITVRMDAAGNTRTELSGDAAKNLTAAEPKVERQVAQTAEGYRVDYIVSNH
GIDERGIPGVRIASVEGLLIETDQFGRYHLEGVAGGPWERGRNFILKVDPATLPPGATFT
TDNPLVRRLTPGIPVRFDFGVKLPPGEIPGTQEQVEMRIGEVMFSPGSAQVTPQYLPAIE
NMASKIKQYGGGEIVITANGENETLAMDRALAVRKSLETMVDPQLFKALQISIRTDPQDP
ATMVVGFAQWPLLGTVLFDTDKATIKPKYLPVIAKVAAALEQLRGTRVVITGHTDLRASD
EYNVALGMRRTRAVFEAIVAHATPELRQHLRVDISNDPAAPADKPGK
NT seq
8964 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaacaccggaacgagctgcaacaaccccggccagaccttcagcggtggggtatgc
acctcggaggatagcgatccgatccagccccgtctgaccctgatcaagaccgtcaccaac
aacaacggcggcgccgcggtggcgacggcgtggacgcttacggcgacgggtccgagcaac
atcagcggcgtcacgggaacgccggcggtaaccgccgcgtcggtcaacgtcggtacctac
accttgtccgagactggtggcccggccggttataccgcgggcacctatagctgcgtcctc
aatggtggcgccgcagtcgtcgccaattcgatcacgctcgcggcgggcgacaacgcgacc
tgcaccatcaacaacgacgaccaggcggcgacgctgaccctggtcaagacggtgaccaac
gacaacggcggcactgcggttgcgacggcgtggacgctgcaggccgcaggtccgacgaac
atcaccggtgccaccggctcggccgcggtgaccaatgcctcggtcaacccgggcagctac
accttgtccgagaccggcggtccggcgggttacacggcgggtacctatagctgcgtgatc
aacggcggcgcggcggtggtgaacaacaccgtggcgctggccgcgggtgataacgcgacc
tgcaccatcaacaacgacgaccaggcggcgacgctgaccctggtcaagacggtgaccaac
gacaacggtggcgccgcggtagcaaccgcgtggacgctggcagcgaccggtccgacgaac
atcaccggtgccaccggttcggccgcggtgaccaatgccccggtcaacccgggcagctac
gccttgtccgagaccggcggtccggcgggttatacggcgggcacctatagctgcgtgatc
aacggcggtgcggcggtagtgaacaacaccgtggcactggccgcgggtgataacgcgacc
tgcaccatcaacaacgacgaccaggcggcgacgctgaccctggtcaagacggtgattaac
gacaaccgtggtacggcgacgacggcagacttcacgctgacggccacggggccgacgtcg
attagtggtacgagcggtgctccagcagtgaccgacgcggtggtcagttcgggcacctat
acgctcactgaaaccaatctcgccggttacgccgcgggtgcgtggtcgtgtacgggcggt
accttgactggaaacagtctggtgctgtccaacggtgatgacgcggagtgcagcattacc
aacgacgatattgcgggaccggaggtaagcagcagcaagtcgtccgacccggcgaccggc
accacggtcaatccgggtgcgacgatcacctacaccttgtcgaccacggtgacgacggca
gcactgacgtcggtctacacgctgaccgatacgatcagcggcgatcagacgttcggcagc
gtgaccaatgccggttcgtacacctgcacgggcaccggtccgttgtcgtgcaccttgccg
gctggcaccttgccgggcacctacacgctgacctacacgaccaccgtcgacgtcgatgcg
gccggcacggtcggtaacagcgtgaccggtactggcggcggcgaccccgatccggagtgc
accaactgcacgacgacccacacggtcgccgcgccggtgatcagcagcatcaagtcgtcg
gatcccgcgaccggcagcacggtcaacccgggtgcgacgatcacctacaccctgagcacc
acgatcagcaccgcggcactgacgtcggtctacaccctgaccgacaccatcagcggcgat
cagacctttggttcggtgaccaatgcgggttcgtacacctgcaccggcaccggtccgttg
tcgtgcaccttgccggccggcaccttgccgggcacctacacgctgacctacacgaccact
gtcgacgcggatgcggccggcacggtcggtaacagcgtgaccggtactggcggcggcgac
cccgatccggagtgcaccaactgcacgacgacccacacggtcgccgcgccggtgatcagc
agcagcaaatcgtcggatcccgcgaccggcagcacggtcaacccgggtgcgacgatcacc
tacaccctgagcaccacgatcagcaccgcggcactgacgtcggtctacaccctgaccgac
acgatcagcggcgatcagacgttcgctgcgatcaccgcgccgggtgcgtacacctgcacg
ggcaccggtccggtggtctgcaccctgccggtcggtaccgcgccgggcacctacacgctg
acctacacgaccaccgtcgacgccgatgcggccggcacggtcggtaacagcgtgaccggt
accggcggtggcgatcccgatccggagtgcaccaactgcaccacgacccacccggtcgcg
gcgccggtgatcagcagcagcaaatcgtcggatcccgcgaccggtaccacggtcaatccg
ggtgcgacgatcacctacaccttgtcgaccaccgtaacgacggcggcactgacgtcggtc
tacaccctgaccgacaccatcagcggcgatcagacgttcggttcggtgaccaatgcgggt
tcgtacacctgcaccggcaccggtccgttgtcgtgcaccctgccggccggcacgttgccg
ggcacctacacgctgacctacacgaccaccgtcgacgcggatgcggcgggcacggtcggt
aacagcgtgaccggtaccggtggtggcgatccggatccggagtgcaccaactgcaccacg
acccatacggtcgccgcgcccgtgatcagcagcagcaagtcgtcggatccggcgacgggc
accacggtcaacccgggcgcgacgatcacctataccctgagcaccacgatcagcaccgca
gcgctgacgtcgatctacacgctgaccgacacgatcagcggcgatcagacgttcggcagc
gtgaccaatgcgggcaactacacctgcaccggcaccggtccgctgtcctgcaccttgccg
gccggtacgttgccaggcacctacacgctgacctacacgaccaccgtcgacgccgatgcg
gccggcacggtcggtaacagcgtgaccggtaccggcggtggcgatcccgatccggagtgc
accaactgcaccacgacccacccggtcgcggcgccggtgatcagcagcagcaaatcgtcg
gatcccgcgaccggtaccacggtcaatccgggtgcgacgatcacctacaccttgtcgacc
accgtaacgacggcggcactgacgtcggtctacaccctgaccgacaccatcagcggcgat
cagacctttggttcggtgaccaatgcgggttcgtacacctgcacgggcaccggtccgctg
tcgtgcaccttgccggccggcacgttgccaggcacctacacgctgacctacacgaccact
gtcgacgcggatgcggccggcacggtcggcaacagcgtgacgggtaccggcggcggcgat
ccggatccggagtgcaccaactgcaccacgacccacccgatcgcggcgccggtgatcagc
agcagcaagtcgtcggatccggcgacgggcaccacggtcgatccgggtgcgacgatcacc
tacaccctgagcaccacgatcagcaccgcagcgctgacgtcgatctacacgctgaccgac
accatcagtggcgatcagacgttcggcagcgtgaccaacgcgggcagctacacctgcacg
ggtgcgctgtcgtgcaccctgccggccggcacgttgccgggcacctacacgctgacctac
acgaccaccgtcgacgccgattcggccggcacggtcggcaacagcgtgaccggcagcggc
ggtggcgatccggatccggagtgcaccaactgcacgacgacccacacggttgcggccccc
gtgatcagcagcagcaaatcgtcggatcccgcgaccggcaccacggtcaacccgggcgcg
acgatcacctacaccctgagcaccacgatcggcaccgcagctctgacgtcggtctacacc
ttgaccgacacgatcagcggcgatcagacgttcgctgcgatcaccgcgccgggtgcatac
acctgcacgggcaccggtccgctgtcgtgcaccctgccggccggcaccctgccgggcacc
tacacgctgacctacacgaccatcgtcgacgccgatgcggccggcacggtgggtaacagc
gtgaccggcagcggcggtggcgatccggatccggagtgcaccaactgcgcgacgacccac
ccggtcgccgcgccggtgatcgccagcagcaaatcgtcggatccggcgaccggcaccacg
gtcaacccgggtgcgacgatcacctacaccttgtcgaccacggtgacgacggcggcgctg
acgtcggtctacacgctgaccgatacgatcagcggcgatcagacctttggttcggtgacc
aatgcgggttcgtacacctgcaccggtaccggtccgttgtcgtgcaccttgccggccggc
acgctgccaggcacctacacgctgacctacacgaccaccgtcgatgccgatgcggccggc
acggtgggtaacagcgtgaccggtagcggcggtggcgatccggatccggagtgcaccaac
tgcaccacgacccacccggtcgccgcgcccgtgatcagcagcagcaagtcgtcggatccg
gcgacgggcaccacggtcaacccgggtgcgacgatcacctacaccttgtcgaccacggtg
acgacggcggcgttgacgtcggtctacaccctgaccgacaccatcagcggcgatcagacc
tttggttcggtgaccaatgcgggttcgtacacctgcaccggcaccggtccgttgtcgtgc
accttgccggccggcacgctgccaggcacctacacgctgacctacacgaccaccgtcgat
gccgatgcggccggcacggtgggtaacagcgtgaccggtaccggtggcggcgatccggat
ccggagtgcaccaactgcaccacgacccacacggtcgccgcgccggtgatcgccagcagc
aaatcgtcggatccggcgacgggcaccacggtcaatccgggcgcgacgatcacctacacc
ctgagcaccacgatcagcaccgcggcgctgacgtcggtctacacgctgaccgacacgatc
agcggcgatcagacgttcggcagcgtgaccaacgcgggcagctacacctgcacgggtacc
ggtccgttgtcgtgcaccctgccggccggcacgttgccaggcacctacacgctgacctac
acgaccactgtcgacgccgatgcggccggcacggtgggtaacagcgtgaccggcagcggc
ggtggcgatccggatccggagtgcaccaactgcgcgacgacccacccggtcgccgcgccg
gtgatcgccagcagcaaatcgtcggatccggcgacgggcaccacggtcaatccgggcgcg
acgatcacctacaccttgtcgaccacggtgacgacggcggccttgacgtcggtctacacc
ctgaccgacacgatcagtggtgaccagacgttcgctgcgatcaccgcgccgggtgcgtac
acctgcacgggcaccggtccggtggtgtgcaccctgccggccggtaccgcgccgggcacc
tacgcggtcagctacacgaccacgatcaatgccgatgcgtcgggcacggtcggtaacagc
gtcgtcggcaacggcggcggcgaccccgatccggagtgcacgtcctgcaccacgacccac
ccggtgctggtcaaccccgcgctgaccatcaccaagaccgcgggcgcaccgaccaccaat
ctgggcgccaacgccagcgtgaccgatgcgggcgacacgatcggctacaccttcgtgatc
accaacaccggcaacgtgaacctgaccaacgtggtggtgaacgatgccaagctggacgca
ccggcggcctgcaatgcgaccacgttggcgccgaatgcgagcacgacctgcaccggcacc
cacaccatcacccaggaggaagtgaacgccggtacctcggacaacaccgcgaccgccacc
ggcacctcgcccaacgcaacgcaggtgacctcgggcccggcatccacccagaccccgctg
ccgcgcaacggcgagctgcgttcgaccaaggcgatgagcggcaatgccgacgaagacggc
agcggctcggtgacggtgggcgataccctgagctacacgatcaccgtgaccaacatcggc
aacatcgatctcggcaacgtggtggtgaccgacgacaagatcacgccgaacacgacgacc
tgcgcgatcgtggtgccgggcgcgacctgcgtgctgaccggtacgtatcgggtcacgccg
gccgacgccaacgcgggcacgatccgcaatgccgccacggtggtcgacacgccgccgccg
ggtggccagccggtctgtccggtcggttcggccgatccgaagtgcaacccgcgcgtcgat
gtgccggtgacccagatgccgaatctgacctcggccaaggccatgaccgccaacgccgac
gaggacggcgacggacgggtgagcgtgggcgacacgctgacctacaccgtcaccgcgacc
aacaccggcaacatcgatctgaccgacgtggtcgtcagcgacgacaagatcacgccgaac
tcgatcacctgcgccacagtcgcgccgaccggcacctgcgtgttgaccggcacctacaag
ctcgcccaggccgacgccgacaacggttcggtggtgaacaccgcgacggtgagcaccagc
acgccgaacgtctgcccggcgggttcgaccgaagcgcgctgccatcccaccgtcaccgtg
ccgatcgaggcgcgtccggccgtggccatcgtcaaggtcgcgaccctgaccgtggacgaa
ggcaagcagggcgtgggcaatgccggcgacgtgatcacctacgcggtgcgcatcaccaac
accggcaacgtcaccctcaacgacatggccaccagcgacgtgctggagaactatccggcc
accacgctgagctgcggcgcgacctcgctggcaccgggtgcgagcacggactgcaatgca
tacacgcacaccatcacccgcgaggaagccaacgccggcggcacgctggacaacatggtc
aaggtgaccgcgcgctacggcaatctcggcggcggcggaaccgccaccggcacggcgacc
gccgatgcgaccgcgattgttccagtcgagcccgaggcgagcagcgatctgttcgtgacc
aagcaggccaatccgcgcgacgtgaagatcggcgatctggtccgttacacgctgacgatc
aagaacgtcggccaggtcgacacgatcgacgcgaccctgaccgacacgcccccggccggc
ttcaccctggtcgaaggcagcgtgcaagtggccgatcgcgatggcggcggccgccaggtc
ggcagctacccgatcaaggtcgaccagatcgacatcaaggccggcgaaagcgcgaccgtg
atgtatctgctgcgggtcggcgccggcgtgcgtcccggtactcacgtcaaccgcgcctat
gccgaggacggcgatgtgcgctcgaacgaggcgacggccgaagtgcagctgatcgccgat
ccgctgctcgacgaatcgctgctgctcggtaccgtgttcgacgaccgcgacggcgacggc
tggcaggattcggccgacctgagccgggtgcgcgtgcagggcggcttcgcggccgacgcc
tacatcgccaactcgaccacggtcgatcgcggcgacggcgccaagcccgagcccgacgcg
agctcgccgatgctgcacggcatcgacctgggcaagatcagtgcgcgtcagtccgaggcc
gatccggtcgccgaccatcgcgtggtgatcagccagtcgctgcgcgaacccaagttcgac
gacggcttcgcgctgaccacggcgcagggcatcaccgtgcgcatggatgcggccggcaac
acccgcaccgagctcagcggcgacgcggccaagaacctcacggccgccgagccgaaggtc
gaacgccaggtcgcgcagaccgccgagggctaccgcgtcgactacatcgtgagcaatcac
ggcatcgacgaacgcggcattccgggtgtgcgcatcgcctcggtcgaaggcctgttgatc
gaaaccgaccagttcggccgttaccacctcgagggcgtggcgggcggtccgtgggaacgc
ggccgcaacttcatcctcaaggtcgatccggccaccttgccgccgggcgcgacgttcacc
accgacaacccgttggtgcggcgtctgactccgggcatcccggtgcgcttcgacttcggc
gtcaagctgccgccgggcgaaatccccggcacgcaggaacaggtcgagatgcggatcggc
gaggtgatgttctcgccgggcagcgcgcaggtcacgccgcagtacctgccggcgatcgag
aacatggcgtcgaagatcaagcagtacggcggcggcgagatcgtcatcaccgccaacggc
gagaacgagacgctggcgatggaccgtgccctggcggtgcgcaagtcgctggagaccatg
gtcgacccgcagctgttcaaggccctgcagatcagtatccgcaccgatccgcaggacccg
gcgacgatggtggtgggcttcgcccaatggccgctgctgggcacggtgctgttcgatacc
gacaaggcgacgatcaagcccaagtacctgccggtgatcgccaaggtggccgcggcgctg
gagcaattgcgcgggacgcgtgtggtcatcaccggccacaccgatctgcgcgcttcggac
gagtacaacgtcgcgctcggcatgcgccgcacgcgggcggtgttcgaggcgatcgtcgcc
cacgccaccccggagctgcgccagcacctgcgcgtcgatatcagcaacgacccggcagcc
cctgccgataagccgggcaagtga
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