Lacticaseibacillus casei 12A: LCA12A_2346
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Entry
LCA12A_2346 CDS
T03665
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lcx
Lacticaseibacillus casei 12A
Pathway
lcx03030
DNA replication
lcx03410
Base excision repair
lcx03420
Nucleotide excision repair
lcx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCA12A_2346
03410 Base excision repair
LCA12A_2346
03420 Nucleotide excision repair
LCA12A_2346
03430 Mismatch repair
LCA12A_2346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcx03032
]
LCA12A_2346
03400 DNA repair and recombination proteins [BR:
lcx03400
]
LCA12A_2346
Enzymes [BR:
lcx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LCA12A_2346
DNA replication proteins [BR:
lcx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCA12A_2346
DNA repair and recombination proteins [BR:
lcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LCA12A_2346
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCA12A_2346
MMR (mismatch excision repair)
DNA ligase
LCA12A_2346
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCA12A_2346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH_8
HHH
HHH_3
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
EKQ00389
LinkDB
All DBs
Position
995260..997284
Genome browser
AA seq
674 aa
AA seq
DB search
MLAKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYP
KLVTPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVGHPVDYNV
ELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLSLEVRGECY
MPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEPERFNV
TTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKVNDLAL
QAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGTTVARA
TLHNADMIRDKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPADTPPAPIPEVCPSCGQKLV
HLDDEVALRCINPMCPAQVQEQLTHFASRNAMNIDGLGPKIVAQLQAKHLVKDVADLYHL
TAADLAKLDKFKEKSINNLLSAINNSRQNSVERLIFGLGIRHVGGKAARILAEHFGDLDH
LMTASQEAIADVPNIGPTIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSF
VAGKTVVITGKFAEFSRPALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNV
PIMNETELLANLKD
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgttagcaaaaccagctgcacaattcacacttgaagaagctcaggcggaagtcgaaaag
cttcggaagcaactgaatcaatggcgtcttgagtattacaccaaagatgcgccaactgtg
accgataacgtctatgacgatcattatcgcgatttacaggcactcgaggaggcttatccc
aagctagtcacgcctgattcgccaactcaagaagtcggcgatgtcattaattcggacttt
gccaaggtgcaacacccaattccgatgttgtcgatgggcgatgttttttcgttcgaagag
ctgagtgaatgggatgctcgcatgcaaagcaatgtcggccatccggtggattacaatgtt
gagttgaaaatcgacgggttggctttatctctgatttatgaaaacggcaaactcgttcaa
ggctcaacacgtggtgatggtaatgtcggtgaagatgtgaccagaaatgtgttgaccatt
gcgtcagttcccaagcagttaaagcagccactttcactcgaggtacggggtgaatgttat
atgcctaaggcggcgtttgccaagctgaatgcgcggcaggaaactgagggcggcacgcct
tttgccaatccacgtaacgcggcagctggatcactccgacagttagacgccaaagtcacc
gctgctcgagagctggataccttcatttatacgttaattgaaccagagcggtttaacgtg
accacgcagcatgaggcgattgcgtttatgcaggcacttggatttacaacaaatccaagt
tcagaagtggctggtgacatgcaggcgattgacacctacattaagaagtacaccaccgac
cgtgatgcgttgccttacggaattgatgggatcgttttgaaagtgaacgatttggcgctg
caagcgcaactaggcaacaccgttaaagtgccacgctgggaaattgcctacaaattccca
cctgaagaagcagagaccgtcattcatgacattgtctggacagttggtcgaaccggtgtg
gtcacgccgactgccgtgatggaccccgttcagcttgctggaaccacagtggcacgggcc
acgttgcacaacgcggatatgattcgtgataaagatattcgcatcggcgacaccgtcatg
ttgcacaaagcaggcgacattattcctgaagtttcgcgggtactggttgctaaacgtcca
gcggatacgccaccggcgccgattccagaggtctgcccgtcatgtggccaaaaactggtc
catctcgacgatgaagtagctttgcgttgcatcaatccgatgtgtccggcacaggtccaa
gagcagctcacccattttgcgtctcgcaacgcgatgaatatcgatggcttaggcccgaag
attgtggcacagttgcaggccaaacatctggtaaaagatgtcgctgatttgtatcacctc
acagctgcggatctggcgaaattagataagtttaaagaaaaatcaattaataatttgtta
agtgcgatcaacaacagtcggcaaaactcggtagaacgcctaatctttgggttgggcatt
cggcacgttggcggtaaagctgcccgaattctggccgagcatttcggcgatttggatcat
ctgatgaccgccagtcaagaggcgatcgcagacgtgccaaatatcgggccgaccattgcg
gaagcgatcgtgacgtattttaaagccgcaacggttcaaaagttgatcacgcagttgcgc
gaagctgatgttaacctgcgttacaccggaccgaccaaaccagtggtcaaagatagtttt
gttgcaggaaaaaccgtcgtgattaccggtaagtttgccgagttttcgcggccagcactc
acgaagcagctagaaggattaggagccaaggtcacaggttcagtttcaaagaaaacggac
ctcctgatcgctggcgacgcggctggcagtaagttggcaaaggcacaaagcttgaatgtc
ccaatcatgaatgagacggaattgctggcgaatttgaaggattga
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