Leclercia sp. LSNIH3: C3F35_02785
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Entry
C3F35_02785 CDS
T05316
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
leh
Leclercia sp. LSNIH3
Pathway
leh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3F35_02785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leh03019
]
C3F35_02785
03009 Ribosome biogenesis [BR:
leh03009
]
C3F35_02785
Enzymes [BR:
leh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C3F35_02785
Messenger RNA biogenesis [BR:
leh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3F35_02785
Ribosome biogenesis [BR:
leh03009
]
Prokaryotic type
rRNA processing factors
C3F35_02785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Troponin-I_N
Motif
Other DBs
NCBI-ProteinID:
AUY37778
LinkDB
All DBs
Position
561501..564686
Genome browser
AA seq
1061 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLGFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPVASYLLNEKRAAVSAIEARLSGVRCVIVPNDQMQ
TPHYSVLRVRKGEETSTLSYMLPKLHEEAMALPSEEEYAERKLPEQPALAAFVMPEAPPA
PAQESTVAKPAAAKPAADVSQPAAQPGLLSRFFSALKKMFAGEEPQPAPAPVEKKEEKQE
RSPDRRKRQNNRRDRNERRDNRSDNNEGREGNESRDNRDNREGREGREGRERREGRDDNR
RNRREKPQQNAEDREIRQPAGEESEKSRSRDEQQPRRERNRRRNDDKRQAQQEVKALNRE
EETVQDADQEERVQVMPRRKQRQLSQKVRFESQTDEAAVEAVAPQVEPVQSTELAKVDLP
AVIENAPEQEETTEGRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSPMPLAIACA
SPEMASGKAWIRYPVARPQEQQFDEQNVTAEAVAPVAPVVDEVITEAAAVVIPEPQPQTA
EVETSHPEVIAAPVTEQPQIITPEDVVVAEQVVEDVKAAEPVEITAEAVEPQPVVEVEVE
TQVQPEVEIAVEPVAEEKPEVAEVKAPEVKPAPAPVAQVNAGVHHATAPMTRAPAPEYVP
EAPRHSDWVRPAFDFEGKGSAGGHSATHQATAPATRPQPAE
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgtctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcatcgaacccagccttgaagccgcatttgtagactac
ggtgccgagcgtcatggtttcctccccctgaaagagattgctcgcgaatacttcccttct
aactataacgcccatggccgtccgaacatcaaagatgtcctgcgtgaaggccaggaagtt
atcgttcagatcgataaagaagagcgtggcaacaaaggcgccgcgctgaccacctttatc
agtctggcaggcagctatctggtactgatgccaaacaacccgcgcgcgggtggcatctct
cgccgcattgaaggcgacgaccgtaccgaactgaaagaagcgctggccagtcttgaactg
ccagacggcatgggcctgattgttcgtaccgcaggcgtaggcaaatctgccgaagcgctg
cagtgggacctcggcttccgcctgaagcactgggaagcgattcagaaagccgctgaaagc
cgccccgccccgttcctgatccaccaggaaagcaacgttatcgtacgtgccttccgtgac
tatctgcgtcaggacatcggtgaaattctgattgataacccaaaagtgcttgagctggct
cgccagcacattgccgcgctgggtcgtcctgatttcactagcaaaatcaaactgtacacc
ggtgagatcccgctgttcagccactaccagatcgaatcgcagattgaatccgccttccag
cgtgaagtccgtctgccatctggcggttctatcgttatcgacagcaccgaggcgctcacc
gccatcgacatcaactccgcacgtgcaacccgcggcggtgatatcgaagaaacggcgttc
aacaccaacctcgaagcggcagatgagattgcgcgtcagctgcgtctgcgcgacctgggc
ggtctgatcgttatcgacttcatcgacatgacgccagtacgtcaccagcgcgcggtggaa
aaccgtctgcgtgaggcggtgcgtcaggatcgtgcgcgtattcagatcagccatatctcc
cgtttcggtctgctggagatgtcccgtcagcgcctgagtccgtcgctgggtgaatccagc
caccacgtctgcccacgctgtagcggcaccggcaccgtgcgtgacaacgaatccctgtca
ctctctatcctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagtccac
gccattgtgcctgtgccggtcgcctcctacctgctgaacgaaaaacgtgccgcggtaagt
gctatcgaagcccgtctgagcggcgtacgctgcgtgatcgtgcctaacgaccagatgcag
accccgcactactccgtgctgcgcgtgcgcaaaggcgaagagacttcaaccctgagctac
atgctgcctaagctgcatgaagaggcgatggctctgccgtccgaagaagagtacgccgag
cgtaaacttccagaacagcctgctctggcggcctttgtgatgccagaagccccacctgcg
cctgcgcaggagagcaccgttgccaaaccagcagcagctaaacctgcggcagacgtcagc
caaccggcagcgcagcctggcctgctgagccgcttcttcagtgccctgaagaaaatgttt
gctggcgaagagccacaacctgccccggcgccggttgagaagaaagaagagaaacaggag
cgttcaccggatcgtcgtaaacgtcagaacaaccgccgtgaccgcaacgagcgtcgcgat
aaccgttcagacaacaacgaaggccgtgaaggcaatgaaagccgtgacaatcgcgataac
cgtgaaggtcgcgaaggccgtgagggtcgtgaacgccgcgaaggacgtgacgataaccgt
cgcaaccgccgtgagaagccgcagcagaacgcggaagatcgtgaaattcgccagccggcc
ggcgaggagtctgaaaagagcagatcgcgtgatgagcagcagccacgccgcgagcgcaac
cgtcgtcgtaatgatgacaagcgccaggcgcagcaggaagtaaaagcgctgaatcgcgaa
gaagagaccgtgcaggatgcggatcaggaagagcgtgttcaggtcatgccacgccgtaag
cagcgtcagctgagccagaaagtccgtttcgagtctcagaccgacgaagcagctgttgaa
gcggtagcgccacaggttgaacccgttcagagcaccgaactggcaaaagtcgacctgcct
gcggtcatcgaaaatgcccctgaacaggaagagaccaccgaaggccgtgacaatgcgggt
atgccgcgtcgctcacgtcgctccccgcgtcatctgcgcgtgagcggtcagcgtcgtcgc
cgttatcgtgacgagcgttatccgctgcagtcgccaatgccgctggcaatcgcctgtgcg
tcaccagaaatggcctccggcaaagcctggatccgttatccggttgcacgtcctcaggag
cagcagtttgacgagcagaacgtgacggccgaagcggttgccccagtcgcgccagtggtt
gatgaggttatcaccgaggctgcggcagttgtcatccccgagccacagccacagactgct
gaagtggaaacgtcacacccggaagtgattgccgcgcctgttactgaacagccgcagatc
atcactcctgaagatgtggttgtcgcagagcaggtagtggaagacgttaaggctgccgag
ccggttgaaattaccgcggaagccgtggagccacagccagttgtagaagtggaagtggaa
acgcaagttcaacctgaagttgagattgctgttgaacctgttgctgaagagaaacctgaa
gtcgctgaagtgaaagcgccggaagtgaaaccagcaccagcgcccgtagctcaggttaac
gcgggtgttcaccacgccactgcgccaatgacccgcgcgccagccccggaatatgtgccg
gaagccccgcgtcacagcgactgggtacgcccggcgtttgatttcgagggtaaaggttca
gcaggtggtcacagcgcaacgcaccaggcgaccgcgcctgccacgcgtccacagccggct
gaataa
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