Laceyella sacchari: C1X05_09540
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Entry
C1X05_09540 CDS
T05304
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lfb
Laceyella sacchari
Pathway
lfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1X05_09540 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfb03019
]
C1X05_09540 (rny)
Messenger RNA biogenesis [BR:
lfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1X05_09540 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
ATP-synt_B
OmpH
KhpA-B_KH
AAA_15
KH_2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
AUS10442
LinkDB
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Position
complement(1897346..1898887)
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AA seq
513 aa
AA seq
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MFEPIDIILLFASLGVGLGAGYWMRKTAAEARIGSAEKEAAEIIEKADKEAEALKKEKIF
EARDEAHRLRSEAEKEIREQRNELQRIERRLNQKEETLERKQHAIEQREDELNGKEKEIG
LRQQEIDELYQEQRKEMERISGLTTEEARQLILAKVENEMRHETAQIIKEMEQQAIEEGD
RRARRILSLAIQRCAADHVAETTVSVVSLPNDEMKGRIIGREGRNIRTLETLTGIDLIID
DTPEAVILSGFDPIRREVARVALEKLVADGRIHPARIEEMVEKSRRDVDERIREYGEQAT
FETGVHGLHPDLIKIIGRLKFRTSYGQNVLKHSMEVAHLSGLLAAELGEDIHLAKRAGLL
HDIGKAIDHEIEGSHVDIGVELAKKYNEHPIVINSIASHHGDCEATSVIAVLVRAADALS
AARPGARRETLEAYIKRLEKLEEICESFDGVEKSYAIQAGREVRIIVKPDEVDDAEATRL
AREITKQIENQLDYPGHIKVTVIRETRSVEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgaaccgattgacatcattctgctgtttgcctctctcggagtcggactcggtgcg
ggatactggatgaggaaaacggcagcagaagcaagaatcggaagcgccgagaaggaagct
gccgagatcatagagaaagctgacaaagaagcagaagcgctcaaaaaagagaagatcttt
gaagcgcgggatgaagcgcatcgcctgcggagtgaagcggaaaaagagattcgcgagcaa
cgcaacgaattgcaacgaatcgaacgccggttaaatcaaaaagaagagacgctcgaacgc
aagcaacatgcaattgaacagcgtgaagatgaactgaacggaaaagaaaaggaaatagga
ttacgccaacaagagattgatgagctataccaggaacagagaaaagaaatggaacggata
tctggattaaccaccgaagaagcgagacagctcattctggcgaaagtggagaatgagatg
cgtcatgaaaccgcgcaaatcatcaaagagatggaacagcaagcgatcgaagaaggagat
cgacgggctcgccggatcttgtcgttggcgatccaacggtgcgcggcggatcacgtggcg
gaaacgaccgtctccgtcgtgtccttgccaaatgatgaaatgaaaggacgaatcatcggt
cgggaagggcgcaatatccgcacattggaaactttgaccgggatcgacctcatcattgat
gatacgccggaagccgtcatcttgtcagggtttgacccgattcgccgtgaagtggcccgc
gtggcgctggaaaaattggttgccgacggacgtattcatccggcgcgaatcgaagagatg
gtggaaaagtcacgccgcgatgtggacgagcgcatccgcgaatacggggagcaagccaca
tttgaaacgggcgtgcacggtttgcatccagatttgatcaagatcatcggccgattgaaa
ttccgaacaagttacggacagaatgtgttgaagcattcgatggaggtagcccatctgtca
ggattgttggcggctgagctgggtgaagatattcacttggcgaagcgagcagggctgttg
catgatatcggtaaagcgatcgaccatgaaatcgaagggtcgcacgtggatatcggtgtc
gaattggctaagaaatacaatgagcatcccattgttatcaacagcatcgcttcccaccac
ggggactgtgaagcgaccagcgtgatcgcggttttggttagggcggcagatgcgttgtcc
gcggccagaccgggggcgcggagagaaacgctggaagcgtacatcaaacgtttggaaaag
ctggaggaaatctgcgagtcttttgatggtgtggagaaatcatatgccattcaagctgga
cgggaagtgcggatcatagtgaagccggacgaagtggatgacgcagaagcgacgcggttg
gcccgtgaaatcacgaagcaaatcgaaaaccaactggactatcccggccatatcaaagta
acggtcatccgggaaacgagatcggttgagtacgcgaaataa
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