KEGG   Lysobacter gummosus: LG3211_2416Help
Entry
LG3211_2416       CDS       T04163                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lgu  Lysobacter gummosus
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lgu00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    LG3211_2416 (ligD)
Enzymes [BR:lgu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LG3211_2416 (ligD)
DNA repair and recombination proteins [BR:lgu03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LG3211_2416 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
2644587..2647184
Genome map
AA seq 865 aa AA seqDB search
MSLRDYVRKRRLGVTPEPAAEAGAKRSRKRRGEPIFVVQLHHARARHYDFRLEADGALKS
WAVPKGPSMRAGERRLAVEVEDHPLDYADFHGDIPQGHYGAGHVDIFDRGVWRTDGDALE
QIGAGKLDFSLQGEHLRGAFTLVRTKPSGRQRQWLLIKRNDEHARDCDADGILRETAAKP
ARAAKADASAGKRKATARKNRSSPKAVVASAAAAKTKQPARPSPRDGWRKTALALDGAKA
AAMPDQIELQLATLREHPPAGEGWLHEVKWDGYRLLAYRQRRLRLESRNRQDWTERFPHL
AEALRALPVRSLIVDGELIAPGRDGHSDFGQLQCLLESGQVQALRYVLFDLLYLDGIDLR
GAAQSRRRDLLRELLATSDSPALAFSEHVEGAAGEVLAASARAGLEGIISKRADAPYRGG
RTQAWIKLKHVADEEFIVVGHTPPKNSRQGFGSLLLAQPGKDGLEYVGRVGSGFDDATLR
SLTRRLKTLHRAEPTLALPAHVPFPSRQVRWVEPELVVDVHSRGRGKEGLVRQASFMRLR
EDKRAADLSAALAGAGRTTRSAKQAPAASSGRATKQESKMAHTHITHPERIVFPDPGISK
GEVADYYRAVERWLLPELIDRPISLLRCPDGIASQCFFQKHHSDSFGPHVHAVNLRESSG
KADYVYVRDIEGVMALVQMNTLEFHPWGARRDKPDRPDRIVFDLDPAEGLAWSEIKRAAR
EVRDRLSEIGLDSWVRLSGGKGVHVCVPIRRGPDWARVKAFSEAFAGAMVEQSPLRYLAT
ASKAARKDRIFIDWLRNARGATSVTSWSLRARSGAPVAMPLRWDEFGRSRASTDFDLAKA
KRRASRLSSDPWEGFAQAEQTLPDL
NT seq 2598 nt NT seq  +upstreamnt  +downstreamnt
atgagcctgcgcgactacgtgcgcaagcgccgcttgggcgtcacgccggaaccggcggcg
gaggcgggcgccaagcgctcgcgcaagcgccgcggcgagccgatcttcgtcgtgcaactg
caccatgcccgcgcgcgccactacgacttccgcctggaagccgacggcgcgctcaagagc
tgggcggtgccgaaggggccgtcgatgcgcgccggcgagcgccggctggcggtcgaggtc
gaggatcatccgctcgattacgccgacttccacggcgatattccgcaaggccactatggc
gccggccatgtcgatatcttcgatcgcggcgtgtggcgcaccgatggggacgcgctcgaa
cagatcggcgcgggcaagctggatttctcgctgcagggcgaacacttgcgtggcgccttc
accctggtgcggaccaaaccctccggacgccagcggcagtggctgttgatcaagcgcaac
gacgaacatgcgcgcgactgcgatgcggacgggattctgcgcgagactgcggcgaaaccg
gctcgcgccgccaaggcggatgcgagcgcggggaaacgcaaggcgaccgcacgcaagaac
cgatccagccccaaggccgttgtagcgtccgccgctgcggcgaaaacgaaacaacccgcg
cggccatcgccccgcgacggttggcgcaagaccgcgctcgcgctcgacggcgccaaggcc
gcggcgatgcccgatcagatcgaattgcaactggcgaccctgcgcgaacatccgccggca
ggcgagggttggctgcacgaggtcaagtgggacggctaccgtctgcttgcctatcgccag
cgcagactgcgcctggaatcgcgcaaccgccaggactggaccgaacgcttcccgcatctg
gccgaggctttgcgcgcattgccggtgcgcagcctgatcgtggacggcgaactgatcgcg
cccggccgcgatggccacagcgacttcggccaattgcagtgcctgctcgaatccgggcag
gtgcaggccttgcgctacgtgctgttcgatctgctgtacctggacggcatcgacctgcgc
ggcgcggcgcaatcgcgacgccgcgatctgttgcgcgagttgctggcgacttcggattcg
ccggcgctggcgttcagcgaacacgtcgaaggcgcggccggcgaggtgctggcggccagc
gcccgcgccggcctggaaggcatcatcagcaagcgcgccgacgcgccgtatcgcggcgga
cgcacgcaggcctggatcaagctcaagcatgtcgccgacgaagaattcatcgtggtcggg
cacacgccgccgaagaacagccggcaagggttcggttcgttgctgctggcgcaaccgggt
aaagacgggctggagtacgtcggcagggtcggcagcggattcgacgacgccacgctgcgc
tcgctgacgcgacggctcaagaccctgcatcgcgcggaaccgacgctggccctgccggcg
cacgtgccgttcccgtcgcggcaggtgcgctgggtcgagccggaactggtcgtggatgtg
cattcgcgcggacgcggcaaggaagggctggtccgccaggccagtttcatgcggttgcgc
gaggacaagcgcgcggccgatctgagcgcggcgttggccggagcggggcggacgacccgc
tccgcgaagcaggcgcctgctgcatcatcgggccgcgcaacgaagcaggagtcgaagatg
gcgcacacccacatcacccaccccgagcgcatcgtgttccccgacccgggcatcagcaag
ggcgaggtcgccgactactatcgcgcggtcgagcgctggctgctcccggagctgatcgac
cggccgatctcgttactgcgttgtcccgacggcatcgcctcgcagtgttttttccagaag
caccatagcgacagtttcggcccgcacgtgcatgcggtgaatctgcgcgagtccagcggc
aaggccgattacgtctatgtgcgcgacatcgagggcgtgatggcgctggtgcagatgaac
accctggaattccatccctggggcgcgcgccgcgacaagccagaccggcccgatcggatt
gtgttcgatctcgatccggccgaaggcctggcctggagcgagatcaagcgcgcagcgcgc
gaggtgcgcgaccgcctcagcgagatcggcctggacagttgggtgcggctgtccggcggc
aagggcgtgcatgtgtgcgtgccgattcgccgcgggccggactgggcccgggtcaaggcc
ttcagcgaggccttcgccggagcgatggtcgaacaatcgccgctgcgttacctcgccacc
gcgtccaaggccgcgcgcaaggaccgcatcttcatcgactggctgcgcaacgcccgcggc
gcgaccagcgtcaccagttggtcgttgcgcgcgcgcagcggcgcaccggtggcgatgccg
ctgcgctgggacgaattcggccgcagccgtgcctcgaccgatttcgatctggccaaggcc
aagcgccgcgcttcgcgcctgagcagcgatccctgggaaggcttcgcccaggccgaacag
acgttgccggacttgtaa

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