KEGG   Lactobacillus helveticus DPC 4571: lhv_0303
Entry
lhv_0303          CDS       T00625                                 
Name
(GenBank) DNA-directed RNA polymerase, beta prime subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lhe  Lactobacillus helveticus DPC 4571
Pathway
lhe03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lhe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    lhv_0303
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lhe03021]
    lhv_0303
   03400 DNA repair and recombination proteins [BR:lhe03400]
    lhv_0303
Enzymes [BR:lhe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     lhv_0303
Transcription machinery [BR:lhe03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     lhv_0303
DNA repair and recombination proteins [BR:lhe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      lhv_0303
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: ABX26530
UniProt: A8YXJ9
LinkDB
Position
314796..318449
AA seq 1217 aa
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC
ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDI
SPKLLEEVIYFAAYIVIDPGDTDLEPKQLLTEAEYREQKAKYGNRFEAKMGAEAIRELLK
KVDLDKEVKDLKKELQTATGQKRTRAIRRLDILDTFKNSGNKPEWMVMDAVPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRGIASNIKNAKRKIDSEDDDIWDVLEDVIKERPVLLNRAPTLHR
LSIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFSSPAEATVAYENGDIHYHTIIGMS
ADAMPKKPWPQGHEHGIFITTYGKLVFNQLFPDDYFYINEPTEENLNNPLDAKYFLGEGQ
DIHDKIDEVGDDLIATPFKSSFLSDSIATIYKYYKVQRTSEYLDDLKKLGYTSSTTSGIT
IGMNDVPEIKDKDEKVAKARKQVDIVSKQFRRGLITEQERHDRVISIWNACKDEIQNEIA
QIHSPRNPISIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF
MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRDDDCGTDRGITVSAIMEGDEMIE
PLFDRLVGRFTAETVKDPKTGEAIVGRDVMMDENMAHKICDAGVTHVKIRSILTCDTPHG
VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV
QELFEARNPKGRATISEVDGVIDSIQENPADHTREITVKGKIDTRSYSVPYTASVAVSEG
DYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIADKHVEVLTRQML
QKVRVLDPGETDILPGEVMDIGQFRDRNKEVIISGGIPATAQSVILGITKAALETNSFLS
AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYRNMEPEADVKKPDSV
YSIGDIEKQMKEKEQSK
NT seq 3654 nt   +upstreamnt  +downstreamnt
ttgatcgacgtaaataaatttgaaagtatgcaaattggtcttgcatcacctaacaagatc
agaagctggtcatatggtgaagttaagaagcctgaaaccatcaactaccgtactttaaaa
cctgaaaaagatggtctatttgatgaaagaatctttggaccaactaaagactggtcatgt
gcctgtggtaaatataaaggtgttagataccgcggtatcgtttgtgaccgttgtggtgtt
gaagttacctcttcaaaagtaagaagagaacgtatgggacacattgaattagctgcccct
gtaactcacatttggtacttcaaaggtatcccatcaagaatgggcttagtattggacatt
tctccaaaattgcttgaagaagttatctactttgctgcatatatcgtaattgatccaggt
gatactgatcttgagcctaagcaattattgaccgaagcagaatatcgtgaacaaaaggct
aaatatggcaaccgttttgaagctaaaatgggtgctgaagctattcgcgaattgcttaaa
aaagttgaccttgacaaagaagttaaggatttgaagaaagaacttcaaactgcaactggt
caaaaacgtacacgtgctatcagacgtttggacattttggatacatttaagaactctggt
aataagcctgaatggatggttatggatgctgttccagttattccaccagatcttcgtcca
atggttcaacttgaaggtggacgtttcgctacatcagatttgaacgatttatacagacgt
gttattaaccgtaataatcgtttgaagagattgcttgatttgaacgctcctaacatcatc
gttcaaaacgaaaagcgtatgcttcaagaagctgttgatgctttaattgataacggtcgt
cgtggtcgtccagttgttggaccaggtaaccgtccacttaagtcactttcacacatgctt
aagggtaagcaaggtcgtttccgtcaaaatttgcttggtaagcgtgttgactactcaggt
cgttcagttatcgatgtttcaccaaaattgaaattctatcaatgtggtgttcctcgtcca
atggctttggaattgtttaagccgtttgtaatgcacgaattggttaaacgtggtattgct
tctaacattaagaatgctaagcgtaagattgatagtgaagatgatgatatttgggatgta
cttgaagatgtaattaaggagcgtccagttcttttgaaccgtgcacctactcttcaccgt
ttgagtattcaagcatttgagccagttttggtaccaggtaagtcaatcagacttcaccca
ttagcttgtgaagcctacaacgccgacttcgatggtgaccagatggccatccacgtacca
ctttcagacgaagctgttgctgaatctcgtttacttatgcttgctgctcaccacatcttg
gctcctaaggatggtaagccaatcgttactccatcacaggatatcgttttgggtaactac
tggttgactcaagctgaacgtggtcgtgaaggtgaaggtatgatctttagttcacctgct
gaagctactgtagcttatgaaaatggtgacattcactaccacactatcattggtatgtca
gctgatgctatgcctaagaagccatggccacaaggtcatgaacatggcattttcattact
acatacggtaagcttgtctttaaccaattattcccagatgattacttctacatcaacgaa
ccaactgaagaaaacttaaataatcctttggatgctaagtacttcttgggtgaaggtcaa
gatattcatgacaagattgatgaagttggcgatgatttaatcgctactccatttaagagt
agtttcttatctgattctattgctactatttacaagtactacaaggttcaacgaacttca
gaatacttggatgatttgaagaagttaggttacactagttcaactacttcaggtattacc
attggtatgaatgatgttccagaaattaaagataaggatgaaaaggtagctaaggcacgt
aaacaagttgatattgtttctaagcaattcagacgtggtttaattactgaacaagaacgt
cacgatcgagtaattagtatttggaacgcatgtaaggacgaaatccaaaacgaaattgct
caaattcactcaccacgtaacccaatttcaatcatggccgactctggtgcccgtggtaac
atttcaaactttactcagttagctggtatgcgtggtttgatggctactcctaacggtggt
ttgttcgaaatccctgttacttcaaacttcaaggaaggtttgtcagtattggaattgttc
atgtcaactcacggtgctcgtaaaggtatgactgatactgctttgaagactgctcagtca
ggttacttgactcgtcgtttggttgatgttgctcaggacgttattattcgtgatgatgat
tgtggtactgatcgtggtattacagttagtgccattatggaaggtgacgaaatgatcgaa
ccattatttgatcgtttggttggtcgtttcactgctgaaacagttaaggatcctaagact
ggtgaagctatcgttggtagagatgttatgatggatgaaaacatggctcataagatctgt
gatgcaggtgtaacccatgttaagattcgttcaattcttacttgtgatactccacacggt
gtatgtcgtaaatgttacggtatgaaccttgctactggtgaagaagttgaagttggtgaa
gcagttggtactgttgccgctcaatcaattggtgaacctggtactcagcttactttgaga
actttccacaacggtggtgttgccggtgccgaagatattactcaaggtttgcctcgtgtg
caagaattgttcgaagcacgtaaccctaagggtcgtgcaaccatttctgaagtagatggt
gtaattgattcaattcaagaaaacccagcagaccatactcgtgaaattactgttaagggt
aagattgatactagaagttacagtgttccttacactgcttctgtggctgtatctgaaggc
gactatgttcaccgtggtgataagttgactcttggttctgttgatcctaaggaattgatc
caagttactgatactttgactactgaaaagtacatcttggctgaagttcaaaaggcatat
agaatgcagggtgtagacattgccgacaaacacgtcgaagtattgactcgtcaaatgctt
caaaaggtacgtgtccttgatccaggtgaaactgacatcttaccaggtgaagttatggat
atcggtcaatttagagaccgtaacaaggaagttattatttctggtggtatcccagcaact
gcacaaagcgttatcttaggtattactaaggccgctttggaaactaacagtttcttgtca
gctgcttcattccaggaaactactcgtgttcttactgatgcttcaatcagaggtaagaat
gatccacttcttggacttaaggaaaacgttattatcggtaagattattcctgctggtact
ggtatgcctgtataccgcaacatggaacctgaagctgacgttaagaagccagattcagtt
tactcaattggtgatattgaaaagcaaatgaaagaaaaagaacaaagtaagtaa

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