Lactobacillus helveticus DPC 4571: lhv_0303
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Entry
lhv_0303 CDS
T00625
Name
(GenBank) DNA-directed RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lhe
Lactobacillus helveticus DPC 4571
Pathway
lhe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lhe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
lhv_0303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhe03021
]
lhv_0303
03400 DNA repair and recombination proteins [BR:
lhe03400
]
lhv_0303
Enzymes [BR:
lhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
lhv_0303
Transcription machinery [BR:
lhe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
lhv_0303
DNA repair and recombination proteins [BR:
lhe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
lhv_0303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ABX26530
UniProt:
A8YXJ9
LinkDB
All DBs
Position
314796..318449
Genome browser
AA seq
1217 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC
ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDI
SPKLLEEVIYFAAYIVIDPGDTDLEPKQLLTEAEYREQKAKYGNRFEAKMGAEAIRELLK
KVDLDKEVKDLKKELQTATGQKRTRAIRRLDILDTFKNSGNKPEWMVMDAVPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRGIASNIKNAKRKIDSEDDDIWDVLEDVIKERPVLLNRAPTLHR
LSIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFSSPAEATVAYENGDIHYHTIIGMS
ADAMPKKPWPQGHEHGIFITTYGKLVFNQLFPDDYFYINEPTEENLNNPLDAKYFLGEGQ
DIHDKIDEVGDDLIATPFKSSFLSDSIATIYKYYKVQRTSEYLDDLKKLGYTSSTTSGIT
IGMNDVPEIKDKDEKVAKARKQVDIVSKQFRRGLITEQERHDRVISIWNACKDEIQNEIA
QIHSPRNPISIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF
MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRDDDCGTDRGITVSAIMEGDEMIE
PLFDRLVGRFTAETVKDPKTGEAIVGRDVMMDENMAHKICDAGVTHVKIRSILTCDTPHG
VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV
QELFEARNPKGRATISEVDGVIDSIQENPADHTREITVKGKIDTRSYSVPYTASVAVSEG
DYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIADKHVEVLTRQML
QKVRVLDPGETDILPGEVMDIGQFRDRNKEVIISGGIPATAQSVILGITKAALETNSFLS
AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYRNMEPEADVKKPDSV
YSIGDIEKQMKEKEQSK
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtaaataaatttgaaagtatgcaaattggtcttgcatcacctaacaagatc
agaagctggtcatatggtgaagttaagaagcctgaaaccatcaactaccgtactttaaaa
cctgaaaaagatggtctatttgatgaaagaatctttggaccaactaaagactggtcatgt
gcctgtggtaaatataaaggtgttagataccgcggtatcgtttgtgaccgttgtggtgtt
gaagttacctcttcaaaagtaagaagagaacgtatgggacacattgaattagctgcccct
gtaactcacatttggtacttcaaaggtatcccatcaagaatgggcttagtattggacatt
tctccaaaattgcttgaagaagttatctactttgctgcatatatcgtaattgatccaggt
gatactgatcttgagcctaagcaattattgaccgaagcagaatatcgtgaacaaaaggct
aaatatggcaaccgttttgaagctaaaatgggtgctgaagctattcgcgaattgcttaaa
aaagttgaccttgacaaagaagttaaggatttgaagaaagaacttcaaactgcaactggt
caaaaacgtacacgtgctatcagacgtttggacattttggatacatttaagaactctggt
aataagcctgaatggatggttatggatgctgttccagttattccaccagatcttcgtcca
atggttcaacttgaaggtggacgtttcgctacatcagatttgaacgatttatacagacgt
gttattaaccgtaataatcgtttgaagagattgcttgatttgaacgctcctaacatcatc
gttcaaaacgaaaagcgtatgcttcaagaagctgttgatgctttaattgataacggtcgt
cgtggtcgtccagttgttggaccaggtaaccgtccacttaagtcactttcacacatgctt
aagggtaagcaaggtcgtttccgtcaaaatttgcttggtaagcgtgttgactactcaggt
cgttcagttatcgatgtttcaccaaaattgaaattctatcaatgtggtgttcctcgtcca
atggctttggaattgtttaagccgtttgtaatgcacgaattggttaaacgtggtattgct
tctaacattaagaatgctaagcgtaagattgatagtgaagatgatgatatttgggatgta
cttgaagatgtaattaaggagcgtccagttcttttgaaccgtgcacctactcttcaccgt
ttgagtattcaagcatttgagccagttttggtaccaggtaagtcaatcagacttcaccca
ttagcttgtgaagcctacaacgccgacttcgatggtgaccagatggccatccacgtacca
ctttcagacgaagctgttgctgaatctcgtttacttatgcttgctgctcaccacatcttg
gctcctaaggatggtaagccaatcgttactccatcacaggatatcgttttgggtaactac
tggttgactcaagctgaacgtggtcgtgaaggtgaaggtatgatctttagttcacctgct
gaagctactgtagcttatgaaaatggtgacattcactaccacactatcattggtatgtca
gctgatgctatgcctaagaagccatggccacaaggtcatgaacatggcattttcattact
acatacggtaagcttgtctttaaccaattattcccagatgattacttctacatcaacgaa
ccaactgaagaaaacttaaataatcctttggatgctaagtacttcttgggtgaaggtcaa
gatattcatgacaagattgatgaagttggcgatgatttaatcgctactccatttaagagt
agtttcttatctgattctattgctactatttacaagtactacaaggttcaacgaacttca
gaatacttggatgatttgaagaagttaggttacactagttcaactacttcaggtattacc
attggtatgaatgatgttccagaaattaaagataaggatgaaaaggtagctaaggcacgt
aaacaagttgatattgtttctaagcaattcagacgtggtttaattactgaacaagaacgt
cacgatcgagtaattagtatttggaacgcatgtaaggacgaaatccaaaacgaaattgct
caaattcactcaccacgtaacccaatttcaatcatggccgactctggtgcccgtggtaac
atttcaaactttactcagttagctggtatgcgtggtttgatggctactcctaacggtggt
ttgttcgaaatccctgttacttcaaacttcaaggaaggtttgtcagtattggaattgttc
atgtcaactcacggtgctcgtaaaggtatgactgatactgctttgaagactgctcagtca
ggttacttgactcgtcgtttggttgatgttgctcaggacgttattattcgtgatgatgat
tgtggtactgatcgtggtattacagttagtgccattatggaaggtgacgaaatgatcgaa
ccattatttgatcgtttggttggtcgtttcactgctgaaacagttaaggatcctaagact
ggtgaagctatcgttggtagagatgttatgatggatgaaaacatggctcataagatctgt
gatgcaggtgtaacccatgttaagattcgttcaattcttacttgtgatactccacacggt
gtatgtcgtaaatgttacggtatgaaccttgctactggtgaagaagttgaagttggtgaa
gcagttggtactgttgccgctcaatcaattggtgaacctggtactcagcttactttgaga
actttccacaacggtggtgttgccggtgccgaagatattactcaaggtttgcctcgtgtg
caagaattgttcgaagcacgtaaccctaagggtcgtgcaaccatttctgaagtagatggt
gtaattgattcaattcaagaaaacccagcagaccatactcgtgaaattactgttaagggt
aagattgatactagaagttacagtgttccttacactgcttctgtggctgtatctgaaggc
gactatgttcaccgtggtgataagttgactcttggttctgttgatcctaaggaattgatc
caagttactgatactttgactactgaaaagtacatcttggctgaagttcaaaaggcatat
agaatgcagggtgtagacattgccgacaaacacgtcgaagtattgactcgtcaaatgctt
caaaaggtacgtgtccttgatccaggtgaaactgacatcttaccaggtgaagttatggat
atcggtcaatttagagaccgtaacaaggaagttattatttctggtggtatcccagcaact
gcacaaagcgttatcttaggtattactaaggccgctttggaaactaacagtttcttgtca
gctgcttcattccaggaaactactcgtgttcttactgatgcttcaatcagaggtaagaat
gatccacttcttggacttaaggaaaacgttattatcggtaagattattcctgctggtact
ggtatgcctgtataccgcaacatggaacctgaagctgacgttaagaagccagattcagtt
tactcaattggtgatattgaaaagcaaatgaaagaaaaagaacaaagtaagtaa
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integrated database retrieval system