Listeria ivanovii subsp. londoniensis WSLC 30167: JL58_07535
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Entry
JL58_07535 CDS
T03401
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lia
Listeria ivanovii subsp. londoniensis WSLC 30167
Pathway
lia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JL58_07535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lia03019
]
JL58_07535
Messenger RNA biogenesis [BR:
lia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JL58_07535
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AIS59840
UniProt:
A0A097BDC5
LinkDB
All DBs
Position
complement(1569470..1571137)
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AA seq
555 aa
AA seq
DB search
MTIKKAKNIKIIPLGGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYL
EENKDRIKAIFLTHGHEDAIGALPYLLQKIKAPVYGTELTIALAKSALKEHRKLRFKNFH
IVDADTTLSFAKIDVSFFRTTHTIPDSVGIVLETSEGAIIYTGDFKFDQSAKDGYASDLS
HIAEFGEKGVLALLSDSSEAEHQGTTSSDSLIEEEIRHAFRMADGRIIVACVASNLIRLQ
QVLEASVATKRKVAIVGKELERVFEIAGSLDKIIIEEDLIIPLKDVKKYNDDEITIIETG
NLGEPIQSLQLMTKGNHPQLNIKPGDTVYITTTPSPSLETMMAKTIDMLYKAGAKVLTMS
NTLFISGHASQEDLKLMINLLKPRYFVPVHGEYRMLISHAKLAHEVGMAKANVFIVGKGE
ILEYKNDKMTAGNRVYSGNTLIDGLGVGDVGNIVLRDRKLLSEDGIFIVVVTLNRKTKTI
TSGPEIISRGFIYVRESEHLIEESSKVVTKIVEKNLQETGFEWAKLKQDIRDQLNRYLFE
QTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgacaataaaaaaagcgaaaaacataaaaatcattccactcggcggtgtcgatgaaagt
ggtaaaaatttatatgttgtagaaatagacgaagatatctttatattagatgcgggttta
atgtttccagaaaatgaattattaggaattgatattgttatcccagattttaaatattta
gaagaaaacaaagacagaattaaagcgattttcttaacacatggtcatgaagacgcaatt
ggcgcacttccttatttacttcaaaaaataaaggcacctgtttatggaactgaactgaca
attgcacttgctaagtctgcactgaaagaacatcgcaaactaagatttaaaaatttccat
attgtcgatgcggatactacgttatcattcgcgaaaattgacgtatcctttttccgtaca
acgcatactattcctgattcagtcgggattgttctggaaacaagtgaaggggcaatcatc
tatacaggtgatttcaaatttgaccaatcagcaaaagatggttacgcttctgatttaagt
catattgctgaatttggtgaaaaaggagttcttgctttactttccgatagctctgaggct
gagcaccaaggaactacttctagtgacagcttaattgaagaagaaataagacatgctttt
cgtatggcagatggtagaattattgtagcttgtgtcgcatcaaatttgattcgtttgcaa
caagttcttgaggcgtctgtagcaactaaacgcaaagtagctatcgtcggcaaagaatta
gaacgcgtgtttgaaattgctggtagtttagataaaattattattgaagaagatttaatc
atcccattaaaagatgtaaaaaaatataatgatgatgaaattactattattgaaacaggt
aatttaggggaaccaatccagtccctacaactaatgacaaaaggaaatcatccacaactt
aatattaagcctggtgacacagtttatataactactacaccatcaccatcgcttgaaact
atgatggcaaaaacaatagatatgctctacaaagctggtgcaaaagtattaacgatgagt
aatacgcttttcatctcaggtcacgcgagccaagaagatttaaaattaatgattaatcta
ctaaaaccacgttatttcgttccagttcatggcgagtatcggatgttgattagccatgct
aagctagctcatgaagttggtatggcaaaagccaatgttttcatcgtaggtaagggggaa
attttagaatataaaaatgataaaatgactgccgggaaccgtgtgtactctggtaataca
cttattgatggtttaggcgtaggagacgttggaaatattgtcttaagagaccgtaaattg
ctttcggaagatggaatttttattgttgtagtcacattaaatcgtaaaacaaaaacgatt
acttctggaccagaaattatctcacgtggcttcatttatgttcgtgaatcagaacattta
attgaagaatcatctaaagtagtgactaaaattgtggagaaaaatttacaagaaactggt
tttgaatgggctaaattaaaacaagatattcgcgatcaattaaatcgctatttatttgaa
caaacaaaacgacgtccaatgattttaccaattatcatggaagtctag
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