Limnohabitans sp. 103DPR2: L103DPR2_01588
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Entry
L103DPR2_01588 CDS
T04120
Symbol
uvrB_1
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L103DPR2_01588 (uvrB_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lim03400
]
L103DPR2_01588 (uvrB_1)
DNA repair and recombination proteins [BR:
lim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L103DPR2_01588 (uvrB_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L103DPR2_01588 (uvrB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Kinesin
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ALK91989
UniProt:
A0A0P0MFP3
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All DBs
Position
1624188..1626311
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AA seq
707 aa
AA seq
DB search
MVVSPDSFEPVLEAVPHVAPEGKFVHYEGSPFELYQPYPPAGDQPTAIEGLVEGLNDGEV
FQTLLGVTGSGKTFTMANVIAQMGKPAIVFAPNKTLAAQLYSEFREFFPKNAVEYFVSYY
DYYQPEAYVPQRDLFIEKDSAINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGEPES
YHRMIMTLRTGDKVGQRDVISQLIRMQYMRNDQDFSRGKFRVRGDTIDVFPAEHSELAVR
IELFDDEVESLQLFDPLTGRIRQKIPRFTVYPSSHYVTPRDKVLAAVETIKVELAERLQQ
LVGMGKLVEAQRLEQRTRFDLEMLSEVGHCKGIENYTRHLSGAEPGAAPSTLTDYMPSDS
IMFLDESHQMIGQLNAMYNGDRARKTTLVEYGFRLPSALDNRPLKFEEFETKMRQCIFVS
ATPADYEKTHSGKVVEQVVRPTGLVDPQVEVRPAIHQVDDVLQEIRIRVEKHERVLITTL
TKRMAEQLTDYLSDNGVKVRYLHSDVDTVERVEILRDLRLGTFDVLVGINLLREGLDIPE
VSLVAILDADKEGFLRSERSLIQTIGRAARNLHGRAILYADRMTDSMNRAIGETERRRAK
QLAHNEAMGITPRSIVKQVRDLIDGVYSEKAGKEAERLELAAVQRAKVEEMSEKDISKAI
KQLEKQMMEHAKNLDFEKAAQVRDQLQMLKAQAFGAPGTDNVVVLKA
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtctcacccgattcttttgaacccgtcctcgaagccgtgccgcatgtggcacct
gaaggcaaatttgtgcattacgagggctcgccctttgagttgtaccaaccctatccgcca
gcgggcgatcaacccaccgccatcgaaggtttggtggaggggctgaatgacggcgaagtg
tttcaaaccttgctgggcgtgacgggctctggcaagactttcaccatggccaacgtgatt
gcccaaatgggcaagcccgccattgtgtttgcgcccaacaaaaccttggccgcacagctg
tactcagaatttagagagttctttcctaaaaacgccgttgagtatttcgtcagctattac
gactactaccagcccgaagcctacgtacctcagcgcgatttgttcattgaaaaagactcc
gccatcaacgagcacattgagcagatgcgcttgtcgtgcaccaagagtttgatggaacgt
cgcgacgtggtcattgtggccaccgtgtcggccatttacggcattggcgagcccgagagt
tatcaccgcatgatcatgacattgcgcaccggcgacaaagtggggcagcgcgatgtgatc
tctcaactcattcgcatgcaatacatgcgcaatgaccaagactttagccgcggcaagttt
cgtgtgcgaggcgacaccatcgatgtgtttcccgccgagcattctgagttggcggtgcgc
attgagttgtttgacgacgaagttgaaagcctgcaattgtttgaccccctaacaggtcga
atccgtcaaaaaattccccgcttcaccgtctatccttccagccactacgtcacaccgcgc
gacaaagttttggctgcggtggaaaccatcaaagttgaactggccgagcgccttcaacaa
ctggtgggcatgggcaaattggtggaagcacagcggctagagcaacgcacgcgttttgat
ttggaaatgctcagtgaagtggggcactgcaaaggcattgaaaactacacccgtcatttg
tcgggcgcagaacctggtgccgcacccagtaccctgaccgactacatgccttcggattcc
atcatgttcttggacgagagccaccaaatgattggtcagctcaacgccatgtacaacggc
gaccgcgcacgcaaaaccacgctggtggaatatggcttcaggttgcccagtgcgctggac
aatcggccgcttaaatttgaagagtttgaaaccaaaatgcgtcaatgtatttttgtgtcg
gccacaccagccgattacgaaaaaacgcattcaggcaaagtggtggagcaggtggtcagg
cccacaggtttggtcgacccccaagtggaagtgcgacccgccattcaccaagtggacgat
gtgctgcaagaaattcgcatccgcgttgaaaagcacgagcgcgtactcatcaccacactg
accaaacgcatggccgagcagctgaccgactatttgtctgacaacggcgtgaaggttcgt
tacttgcactccgatgtcgacactgtggagcgtgttgaaattttgcgcgacctgcgcctt
ggcaccttcgatgtgttggtgggcatcaatttgttgcgcgaaggtttggacattcccgag
gtgtctttagtggccattttggacgccgacaaagaaggctttttgcgctcagaacgcagc
ttgatccaaaccattggccgtgcagcgcgaaacctccatggccgggctattctttatgcc
gatcgcatgaccgattccatgaatcgggctatcggcgaaaccgagcgccggcgggccaaa
caactggcccacaacgaagccatgggcatcacgccgcgcagcatcgtgaagcaagtgcgc
gacctgattgatggtgtgtacagcgagaaggcgggcaaagaagccgaacgcttagagttg
gccgccgttcaacgggccaaagtggaggagatgagcgagaaggacatctccaaagccatc
aagcaactcgagaagcagatgatggaacacgccaaaaacctcgatttcgagaaggcggcc
caggtgcgagaccagctgcagatgctcaaggcgcaagcttttggtgcaccaggaaccgac
aacgtggtggtgctgaaagcctga
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