KEGG   Listeria innocua (serotype 6a): lin1473
Entry
lin1473           CDS       T00067                                 
Name
(GenBank) similar to unknown proteins
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
lin  Listeria innocua (serotype 6a)
Pathway
lin03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lin00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    lin1473
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lin03019]
    lin1473
Messenger RNA biogenesis [BR:lin03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     lin1473
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Lactamase_B_6
Other DBs
NCBI-ProteinID: CAC96704
Pasteur: LIN01473
UniProt: Q92BS1
LinkDB
Position
complement(1473700..1475367)
AA seq 555 aa
MTIKKAKNIKIIPLGGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYL
EENKDRVKAIFLTHGHEDAIGALPYLLQKIKAPVYGTELTIALAKSALKEHRKLRFKNFH
VVDAETTLSFSKIDVSFFRTTHTIPDSVGIVLETSEGSIIYTGDFKFDQSAKDGYASDLS
HIAEFGEKGVLALLSDSSEAEHPGTTSSDSLIEEEIRHAFRMADGRIIVACVASNLIRLQ
QVLDASVATKRKVAIVGKELERVFEIAGSLGKIVIEEDLIIPLKELKKYNDEEITIIETG
NLGEPIQSLQLMTKGNHPQFNIKPGDTVYITTTPSPSLETMMAKTMDMLYKAGAKVLTMS
NNLFISGHASQEDLKLMLNLLKPRYFVPVHGEYRMLISHAKLAHEVGMAKSEVFIVGKGE
ILEYKNDKMTAGNRVYSGNTLIDGLGVGDVGNIVLRDRKLLSEDGIFIVVVTLNRKTKTI
TSGPEIISRGFIYVRESEHLIEESSKVVTKIVEKNLQETGFEWAKLKQDIRDQLNRYLFE
QTKRRPMILPIIMEV
NT seq 1668 nt   +upstreamnt  +downstreamnt
ttgacaataaaaaaagcgaaaaacataaaaatcattccactcggcggtgtcgatgaaagt
ggcaaaaatttatatgtagtagaaatagacgaagatatctttatattagatgcaggctta
atgttcccagaaaacgaattactaggaattgatattgttatccctgatttcaaatattta
gaagaaaacaaagacagagtgaaagccattttcttaactcatggtcatgaagatgcgatt
ggtgcactgccatacttacttcaaaaaattaaagcacctgtttacggtactgagctaaca
attgcacttgcaaagtcagcgcttaaagaacaccgcaaactacgctttaaaaatttccat
gttgttgatgcagaaacaaccttatctttttctaaaattgatgtatctttcttccgtacg
acgcatacaattcctgattcggttgggattgtacttgaaacaagtgaaggttccatcatt
tatactggtgactttaaatttgatcaatcagccaaagatggatatgcttctgatttaagt
catattgccgaatttggtgaaaaaggagtacttgctttactttcagatagttcagaagca
gagcatcctggtaccacatcaagcgacagtttaattgaagaagaaattagacatgctttt
agaatggcagatggtagaattattgttgcttgtgtggcttctaatttgattcgtttgcag
caagtacttgacgcatccgttgctactaagcgtaaagtcgctattgttggtaaagaatta
gagcgtgtatttgaaatagcaggtagcttaggtaaaatcgttattgaggaagacttgatt
attcctctaaaagaacttaaaaaatataatgatgaagaaatcactattattgaaacagga
aacttaggtgaaccaattcaatcattacaactaatgactaaaggtaatcaccctcaattt
aatattaaaccaggagatacggtttatattacaacaacaccgtcaccatcacttgaaacg
atgatggcgaaaacgatggatatgctctataaagctggagcaaaagtattaacgatgagt
aataatctttttatctctggccatgcaagccaagaagatttgaaattaatgcttaacttg
ttaaaacctagatatttcgttcctgttcacggtgaataccggatgttaattagtcatgcg
aaattagctcatgaagttggcatggcaaaatcagaagtatttattgtcggtaaaggtgaa
attttagaatataaaaatgataaaatgactgctggaaaccgtgtctattctggaaataca
ctaattgatgggttaggtgtaggagacgttggaaacatcgtactgagagaccgtaagtta
ctttctgaagacggtattttcatcgtagttgttacgcttaatcgtaaaactaaaacaatt
acttccggaccagaaatcatttcacgtggctttatctatgtgcgtgaatctgagcattta
attgaagaatcatccaaagtcgtaacaaaaatcgtcgaaaaaaacctccaagaaactggc
tttgaatgggctaaattaaaacaagatattcgcgatcaattaaatcgctacctatttgag
caaacaaaacgacgtccaatgatcttaccaatcattatggaagtctag

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