Listeria innocua (serotype 6a): lin1473
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Entry
lin1473 CDS
T00067
Name
(GenBank) similar to unknown proteins
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lin
Listeria innocua (serotype 6a)
Pathway
lin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lin1473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lin03019
]
lin1473
Messenger RNA biogenesis [BR:
lin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
lin1473
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
CAC96704
Pasteur:
LIN01473
UniProt:
Q92BS1
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Position
complement(1473700..1475367)
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AA seq
555 aa
AA seq
DB search
MTIKKAKNIKIIPLGGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYL
EENKDRVKAIFLTHGHEDAIGALPYLLQKIKAPVYGTELTIALAKSALKEHRKLRFKNFH
VVDAETTLSFSKIDVSFFRTTHTIPDSVGIVLETSEGSIIYTGDFKFDQSAKDGYASDLS
HIAEFGEKGVLALLSDSSEAEHPGTTSSDSLIEEEIRHAFRMADGRIIVACVASNLIRLQ
QVLDASVATKRKVAIVGKELERVFEIAGSLGKIVIEEDLIIPLKELKKYNDEEITIIETG
NLGEPIQSLQLMTKGNHPQFNIKPGDTVYITTTPSPSLETMMAKTMDMLYKAGAKVLTMS
NNLFISGHASQEDLKLMLNLLKPRYFVPVHGEYRMLISHAKLAHEVGMAKSEVFIVGKGE
ILEYKNDKMTAGNRVYSGNTLIDGLGVGDVGNIVLRDRKLLSEDGIFIVVVTLNRKTKTI
TSGPEIISRGFIYVRESEHLIEESSKVVTKIVEKNLQETGFEWAKLKQDIRDQLNRYLFE
QTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgacaataaaaaaagcgaaaaacataaaaatcattccactcggcggtgtcgatgaaagt
ggcaaaaatttatatgtagtagaaatagacgaagatatctttatattagatgcaggctta
atgttcccagaaaacgaattactaggaattgatattgttatccctgatttcaaatattta
gaagaaaacaaagacagagtgaaagccattttcttaactcatggtcatgaagatgcgatt
ggtgcactgccatacttacttcaaaaaattaaagcacctgtttacggtactgagctaaca
attgcacttgcaaagtcagcgcttaaagaacaccgcaaactacgctttaaaaatttccat
gttgttgatgcagaaacaaccttatctttttctaaaattgatgtatctttcttccgtacg
acgcatacaattcctgattcggttgggattgtacttgaaacaagtgaaggttccatcatt
tatactggtgactttaaatttgatcaatcagccaaagatggatatgcttctgatttaagt
catattgccgaatttggtgaaaaaggagtacttgctttactttcagatagttcagaagca
gagcatcctggtaccacatcaagcgacagtttaattgaagaagaaattagacatgctttt
agaatggcagatggtagaattattgttgcttgtgtggcttctaatttgattcgtttgcag
caagtacttgacgcatccgttgctactaagcgtaaagtcgctattgttggtaaagaatta
gagcgtgtatttgaaatagcaggtagcttaggtaaaatcgttattgaggaagacttgatt
attcctctaaaagaacttaaaaaatataatgatgaagaaatcactattattgaaacagga
aacttaggtgaaccaattcaatcattacaactaatgactaaaggtaatcaccctcaattt
aatattaaaccaggagatacggtttatattacaacaacaccgtcaccatcacttgaaacg
atgatggcgaaaacgatggatatgctctataaagctggagcaaaagtattaacgatgagt
aataatctttttatctctggccatgcaagccaagaagatttgaaattaatgcttaacttg
ttaaaacctagatatttcgttcctgttcacggtgaataccggatgttaattagtcatgcg
aaattagctcatgaagttggcatggcaaaatcagaagtatttattgtcggtaaaggtgaa
attttagaatataaaaatgataaaatgactgctggaaaccgtgtctattctggaaataca
ctaattgatgggttaggtgtaggagacgttggaaacatcgtactgagagaccgtaagtta
ctttctgaagacggtattttcatcgtagttgttacgcttaatcgtaaaactaaaacaatt
acttccggaccagaaatcatttcacgtggctttatctatgtgcgtgaatctgagcattta
attgaagaatcatccaaagtcgtaacaaaaatcgtcgaaaaaaacctccaagaaactggc
tttgaatgggctaaattaaaacaagatattcgcgatcaattaaatcgctacctatttgag
caaacaaaacgacgtccaatgatcttaccaatcattatggaagtctag
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