Lawsonia intracellularis N343: LAW_00832
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Entry
LAW_00832 CDS
T02437
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lir
Lawsonia intracellularis N343
Pathway
lir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAW_00832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lir03019
]
LAW_00832
Messenger RNA biogenesis [BR:
lir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAW_00832
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Mit_KHE1
Motif
Other DBs
NCBI-ProteinID:
AGC50227
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All DBs
Position
999178..1000740
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AA seq
520 aa
AA seq
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MSFILVLCTVSSLFVGGGTGIFLYKKVSKKYIGDAKELAIRIVEEARKEGQAQKKEILLQ
GQNEIFNQKKEFEFDFKQREKELSIKDKKLQVQSERLEERLERAAEKEHEILKVEKELSI
KERNLLTLEEQLKSRIDEQEKQLQKISGLTVEEAKQSLFEEVKNRSRHESAKMMRLIEAE
AVETANRKAKEIIANAIQRYAGDYVSEHTVTAVTLPSEDMKGRIIGREGRNIRALESATG
VDFIIDDTPETVVLSAYSPMRRQVAKMALERLIQDGRIHPARIEEIVRKCEEDLAIQVRE
IGEQATFDIGVYGIHPELIRILGQLNYRTSYTQNVLRHSIEVASLCGMMAAELGVDIKKA
KRAGLLHDIGKAVDHEVEGSHAIIGAELAKKFNETEEIVHAIEAHHEEKGKPETALAILV
QASDCLSGARPGARLELLESYVKRLEHLENIAGEFEGVSKAYAIQAGREVRVMVDADSIG
DDQTYLLCKDIAGRIEESLTYPGQIRVTVIREHRAVGYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttatacttgttctctgtacagtaagttctctttttgttggaggaggtacaggg
atttttctttataaaaaagtgagtaaaaaatatattggggatgcaaaagaattagctata
cgtatagttgaagaggccagaaaagaagggcaagcacaaaaaaaagaaattttgctccag
ggacaaaatgaaatttttaatcaaaaaaaagaatttgagtttgattttaaacaaagggag
aaggagcttagtataaaagacaaaaagcttcaggtccaaagcgaaagattagaagaacgt
cttgaaagagctgcagaaaaagagcatgaaattttaaaagtagaaaaagagctttctatt
aaagaacgtaatcttttaactcttgaagagcagctaaaaagtcgtatagatgaacaagaa
aaacagcttcaaaaaatttccggattaactgtagaagaggcaaaacaatctctatttgaa
gaggtaaaaaaccgttctcgccatgagtcagcaaaaatgatgcgacttattgaagcagaa
gctgttgaaactgctaatcgtaaagcaaaagaaattattgcaaatgctatacagcgctat
gctggtgattatgtttctgaacatacagtaactgcagttacactccccagtgaagatatg
aaaggccgcattattggtcgtgaggggagaaatattcgtgcattagagtctgcaactggt
gttgactttattattgatgatactccagaaactgttgttttatctgcttatagtcctatg
cgtcgtcaagtagctaaaatggcacttgaacgtcttattcaagatggacgtattcaccca
gcacgtattgaagaaattgttcggaaatgtgaggaagatcttgcaattcaagttcgggaa
ataggcgagcaagctacatttgatattggtgtttatggtattcatcctgagcttatacgt
attttaggccagttgaactatcgtactagttatacgcaaaatgtgttacgtcattctata
gaagttgcatcattatgtggtatgatggctgcagaacttggtgttgatatcaaaaaggca
aagagagcaggtttactccatgatataggaaaagctgttgatcatgaagtagaaggttct
catgctattattggtgctgagttagcaaaaaaattcaatgaaactgaagagattgttcat
gcaattgaagcacaccatgaagagaaagggaaaccagaaactgcccttgctattcttgtt
caagcttcagactgtctttctggtgcaaggcctggcgcacgactagagcttcttgaaagc
tatgttaaacgtttagagcatcttgaaaatattgcaggtgaatttgaaggggtatctaaa
gcgtatgctattcaagcaggacgagaggtccgtgtaatggttgatgcagattccataggt
gatgatcaaacataccttttgtgtaaagatattgctggaagaattgaagaaagtttaaca
tacccaggtcaaattagagttacggtaattcgagaacatcgtgctgttgggtatgcaaaa
taa
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