KEGG   Lotus japonicus: Lj3g3v3033290.1Help
Entry
Lj3g3v3033290.1   CDS       T04348                                 

Gene name
Lj3g3v3033290.1
Definition
(Kazusa) -
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lja  Lotus japonicus
Pathway
lja03030  DNA replication
lja03410  Base excision repair
lja03420  Nucleotide excision repair
lja03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lja00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    Lj3g3v3033290.1 (Lj3g3v3033290.1)
   03410 Base excision repair
    Lj3g3v3033290.1 (Lj3g3v3033290.1)
   03420 Nucleotide excision repair
    Lj3g3v3033290.1 (Lj3g3v3033290.1)
   03430 Mismatch repair
    Lj3g3v3033290.1 (Lj3g3v3033290.1)
Enzymes [BR:lja01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
DNA replication proteins [BR:lja03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Lj3g3v3033290.1 (Lj3g3v3033290.1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
DNA repair and recombination proteins [BR:lja03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
   NER (nucleotide excision repair)
    Other NER factors
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
   MMR (mismatch exicision repair)
    Other MMR factors
     Lj3g3v3033290.1 (Lj3g3v3033290.1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
LinkDB All DBs
AA seq 776 aa AA seqDB search
MIHFRPYLSPPFLSHHRITAVKLFSLPFLTLPRRAMSKPPSAFDALMSGARAAAAKKKPP
PPSAASPKKRKSPHSSPAPAPTLNPNNLKTPETVQPPRDSVETVQPSSEEAVETVLQPAK
KICNSSGSLIAELKELAPRLKKKPSEFDPSTVVCWEKGKPVPFLFLCLAFDMIDKESGRI
VITDIACNLLRTVIHATPEDLVPVVYFLANRIAPAHEGLELGIGDASIIKALAESCGRTE
SQIRKLNKDRGDLGLVAKECRSSQSMMRKPDALTIRKVFTIFRLIAKESGKDSQEKKKNH
IKSLLVAATDCEPIYLIRLLQTKLRIGLAEQTLLASLGQAAVYTEEHSKPPPEIQSPLEE
AAKIVKQVYSVLPDYDKVLSSLLKDGVWKLPKTCKFTLGVPVGPMLSKPTKGVSEILNKF
QDVEFTCEYKYDGERAQIHYMENGSVEVYSRNAEWNTGKFPDVVAAVSRLKKTSVSSFVL
DCEVVAYDRAKQRILPFQVLSTRARKNVAVSDIKVDVCIFAFDLLYLNGQILLQENLKTR
REHLYASFEEESGYFQFATAITSNDVEEIQKFLDKAIGASSEGLIIKTLNEDATYEPSKR
SLNWLKLKKDYMDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNSNEEFQSICKIGT
GFSEDVLIERSKGLQTKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPVYRAA
VGIVDSNKGISLRFPRLLRVRPDKDPEQATSSEQVAEMYNAQKHNQTDNQNDNEDD
NT seq 2334 nt NT seq  +upstreamnt  +downstreamnt
atgatccatttccgtccttacctctctcccccattcttatctcatcatcgaatcaccgcc
gtcaagcttttctctcttccctttctcaccctccctcgccgcgccatgtccaaaccaccc
tccgccttcgacgccctaatgtccggcgcacgcgccgccgccgccaagaagaaaccacct
ccaccttccgccgcatcccccaagaaacgaaaatcccctcactcctccccagcccccgcc
cccaccctaaaccctaacaacctcaaaacccccgaaaccgttcaaccgcctagggattca
gttgaaaccgttcaaccgtcatcggaagaagccgttgaaactgtgcttcaaccggcgaag
aagatttgcaacagcagcgggtctttgatcgccgagttgaaggagctggccccgaggctc
aagaagaagccgtcggagttcgatccgagtactgtggtttgctgggagaagggaaaaccc
gtgccgttcctgttcttgtgcttggcgtttgacatgattgacaaggagtcagggaggatt
gtgatcacggacattgcgtgcaaccttctgagaacggtcatacacgctacgccggaggat
cttgtgccggtggtctatttccttgcgaataggattgctccggcgcatgaagggttggaa
ttgggaattggtgatgcttccattatcaaggcgctcgcggagtcttgtggaaggactgag
tcgcagattaggaagctgaataaggatagaggtgatttgggattggtcgccaaagagtgc
cgttcatctcagtcaatgatgcggaagcctgatgcattgactataaggaaggttttcacg
atctttcgcctcattgccaaggaatctggaaaagacagtcaagagaagaaaaagaatcat
ataaagtctcttcttgttgctgcaactgactgtgaacctatatatctaattcgtttgtta
cagacaaagttgcgaattggattagctgaacaaactctcttagcttcattagggcaggct
gcagtgtacactgaagaacattctaaaccacctcctgaaattcagtctcctctagaagag
gctgcaaaaatcgttaaacaagtctattctgttcttcctgactatgacaaagtactgtct
tcactgcttaaggatggtgtgtggaaacttccaaagacatgtaaatttactcttggtgtt
cctgtcgggcctatgctttccaaaccaaccaagggtgtatctgaaattctgaataaattc
caggatgtagagtttacctgtgaatacaaatacgacggagagcgtgctcagatacattac
atggagaatggctcagttgaagtttacagcagaaatgcagaatggaatactggaaagttt
cctgatgttgttgctgcagtttcaaggttaaagaaaacaagtgtatcatcatttgttctt
gattgtgaagttgttgcatatgaccgtgcaaaacaaagaatccttccttttcaggtgctt
agtactcgggctcgcaaaaatgtagctgtgagtgacataaaggttgatgtttgcatattt
gcctttgatttgttgtatcttaatggtcaaatacttcttcaggaaaacttgaaaactcgt
agagagcatctctatgcctcttttgaggaagaatctggatattttcagtttgcaacagca
ataacatcaaatgatgttgaggagatacagaagtttcttgacaaagccattggtgcaagt
tctgagggattaatcattaaaacattaaatgaagatgctacatatgaaccttccaagcgg
tcactcaactggctaaaactgaagaaagattatatggataatataggagactcactagat
ttagttcctattgctgcttttcacggtcgtgggaaacgtacaggagtctatggtgccttt
ctccttgcttgctatgacaacagtaatgaagaatttcaaagtatttgtaagattggaact
ggattctctgaagatgttcttatagagcgttctaaaggcctccagactaaagtcattccg
aagccaaaggcctactatcggtatgcagaaacaataaatcctgatgtttggtttgaagcc
agtgaggtgtgggaggtgaaggctgcagacctgactattagccccgtttatcgagctgca
gtgggtattgtagattcaaacaagggcatatctcttcgatttccacgcctacttcgagta
cggcctgacaaagatcctgagcaggccacatcgtctgagcaggttgctgaaatgtataat
gctcagaaacacaatcaaacggacaaccaaaatgacaatgaagatgattgaatg

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