Listeria monocytogenes R479a (serotype 1/2a): LMR479A_1523
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Entry
LMR479A_1523 CDS
T03180
Symbol
rnjB
Name
(GenBank) ribonuclease J2
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lmr
Listeria monocytogenes R479a (serotype 1/2a)
Pathway
lmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMR479A_1523 (rnjB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmr03019
]
LMR479A_1523 (rnjB)
Messenger RNA biogenesis [BR:
lmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LMR479A_1523 (rnjB)
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GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
CDM16745
LinkDB
All DBs
Position
complement(1474361..1476028)
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AA seq
555 aa
AA seq
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MTIKKAKNIKIIPLGGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYL
EENKDRVKAIFLTHGHEDAIGALPYLLQKIKAPVYGTELTIALAKSALKEHRKLRFKNFH
VVNEETTLSFSKIDVSFFRTTHTIPDSVGIVLETSEGSIVYTGDFKFDQSAKDGYASDLS
HIAEFGEKGVLALLSDSSEAEHPGTTSSDSLIEEEIRHAFRMADGRIIVACVASNLIRLQ
QVLDASVATKRKVAIVGKELERVFEIAGSLGKIVIEEDLIVPLKELKKYSDDEITIIETG
NLGEPIQSLQLMTKGNHPQLNIKPGDTVYITTTPSPSLETMMAKTMDMLYKAGAKVLTMS
NNLFISGHASQEDLKLMINLLKPRYFVPVHGEYRMLISHAKLAHEVGMAKSEVFIVGKGE
ILEYKNDKMTAGNRVYSGNTLIDGLGVGDVGNIVLRDRKLLSEDGIFIVVVTLNRKSKTI
TSGPEIISRGFIYVRESEHLIEESSKVVTKIVEKNLQETGFEWAKLKQDIRDQLNRYLFE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgacaataaaaaaagcgaaaaacataaaaatcattccactcggcggtgtcgatgaaagt
ggcaaaaatttatatgtagtagaaatagacgaagatatctttatattagatgcgggctta
atgttccccgaaaatgaattactaggaattgatattgtcattcctgatttcaaatattta
gaagaaaataaagatcgtgtaaaagctatttttctaacacacggtcacgaagatgccatt
ggtgcattgccatacttacttcaaaaaatcaaagcgcctgtttacgggacagaattaacg
attgctctagcaaaatcagcgcttaaagagcaccgcaaactacgcttcaagaatttccat
gtcgttaacgaagaaacaacattgtccttttcaaaaattgatgtttcctttttccggaca
acacatactattcctgattctgtgggtattgtccttgaaacaagcgaaggatccattgtt
tatacaggggatttcaaattcgatcaatcagcgaaagacggctacgcttctgatttaagc
catattgcagaatttggcgaaaagggtgtacttgccttgctttcggatagttcagaggct
gagcaccctggaacgacttctagtgatagtttaattgaagaagagatcagacatgctttc
agaatggcagacggcagaattatcgttgcttgtgtagcttctaatttaattcgcttacaa
caagtactcgatgcatccgttgcaaccaaacgtaaagtcgctattgttggtaaagaacta
gagcgtgttttcgaaattgctggcagtttaggtaaaatcgtcattgaagaagacttaatt
gttccgttaaaagaacttaaaaaatatagcgatgatgaaattacaattattgaaacaggt
aatctaggagaaccaattcaatcattacaattaatgactaaaggaaaccatccgcaactt
aacatcaaacctggcgatactgtttacattacgactacgccatcaccatctcttgaaaca
atgatggcgaaaacaatggatatgctctataaagcaggtgcgaaagtgctaactatgagt
aacaatctcttcatctctggtcatgcaagccaagaagatttaaaattaatgattaactta
ttaaaaccaagatattttgttccagttcacggagaatatcgcatgttaatcagccatgct
aaattagctcatgaagttggcatggcaaaatcagaagtatttatcgttggtaaaggcgaa
attttagaatataaaaatgataaaatgacggccggaaatcgcgtttattctggtaatact
ttaattgatggattaggtgttggtgatgtaggaaacatcgtgctacgcgaccgtaaatta
ctctcagaagacggaattttcatcgttgtagtaacacttaatcgtaaatcaaaaaccatt
acttcaggaccagaaatcatttcacgcggctttatctacgtgcgcgaatcagaacatttg
attgaagaatcttccaaagttgtcacaaaaattgttgaaaaaaatcttcaagaaaccggc
tttgaatgggcgaaattaaaacaagacattcgcgaccaattaaatcgctacttatttgaa
aaaacaaaacgacgtccaatgattttaccaattattatggaagtctag
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