Listeria monocytogenes 10403S (serotype 1/2a): LMRG_02636
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Entry
LMRG_02636 CDS
T01984
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lmt
Listeria monocytogenes 10403S (serotype 1/2a)
Pathway
lmt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMRG_02636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmt03400
]
LMRG_02636
Enzymes [BR:
lmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMRG_02636
DNA repair and recombination proteins [BR:
lmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LMRG_02636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
UB2H
dATP-dGTP_PPHyd
IstB_IS21
DUF267
Motif
Other DBs
NCBI-ProteinID:
AEO05225
UniProt:
A0A0H3GH72
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All DBs
Position
212260..215799
Genome browser
AA seq
1179 aa
AA seq
DB search
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNL
YHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV
PVAGLRKMLPPVSLWKHFNVSIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI
IDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIV
KRLEKKMMLTLNELKEQEDKQALIENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDY
LPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEGNHSPK
IYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERA
EKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKI
KKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGE
DKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAERE
AEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTE
VALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETL
KGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLY
NRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVD
IPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEF
TELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIV
PVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYL
FTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGT
QLKITINVQNKPLKEWLYQVKSLAEKLRGAMKEKASTEN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggattacaacaattaatatatgaacaaaaagatattcgggcggtcttaaatgcg
ctggatgaaaaagaaaaagcacaacttgtcacagggctcacaggttcttcgcgtgcatta
tttgcaagcgtggtagaaggtgcgtcaaagcgtccggttgtatttgtcacgcataattta
taccacgcacaaaaattatatgacgatttactttctttaatggatgtcgatcgactgttt
ttatatccagctgatgaattaatttcttctgagttgagtatttctagcccagaacttcgt
ggtcagcgtgtggaagcacttgacttcttgctatccgggaaaccggggattgttatcgtc
ccagtagctgggttaagaaaaatgcttccgccagtatcgctttggaaacatttcaacgta
tccattgtagaaggtgaagaaattgatccagatgtactgcgtcaaaaattagttacaatg
ggatacacgatgagtggaatggtaaatactcctggagaattcagtgttcgcggcggaatt
attgatatttatccaattaccgaagagtttccaattagaatagaactttttgacaccgaa
gtggattctcttcgtttctttgatgtggaaacgcagcgctcgacaacacgcgtggaagaa
tttcgcctgctacctgcaactgaaatcattttagatcaaagctattacccggatatcgtc
aagcgcttagaaaagaaaatgatgcttactttaaatgaactaaaagaacaggaagataag
caagcgctcattgaaaatttagaagaagaccttgaaatgcttcgttctggcgtgaaacca
gacatgttctttaaatatatcggtctggcgtatccggacccagcctcgctttttgattat
ttaccaaaaaacacggcaattttgctggatgagtttgggcggattttggaaacagaagaa
agcttggagcgagaagaagcggagtggcaaacggaaacattaagtcgaatggaaacagtt
cgcgacgtgcaagtaagccattctttcaaaaaattattagaaggaaatcactcgccaaaa
atatacctatcacttttccaaaaacaaatggcgagcatgcgcgtttctaaaacaaccaac
atcgtctataaacaaatgcaacaatttcacggtcaaatgaatgtgttaaaaactgagctg
gaaagttggcataagaacaattatgcggttgttatattagctccaaacttagaacgcgca
gaaaaaatgcaacaaactttgactgactacgatatggaaagtacgattttgaaaaaagaa
tcggatgtgccgaaatatggaatggttcaatttgtcatcggaacgttccagaatggtttt
gaacttccgcttgccaaagtagcgattataagtgaaactgaactgttcaataaaaaaatc
aaaaaggtgaagaaaagacaaaaactctcaaatgcagaacgaattcaaagttattctgag
ttaaaagtaggcgactacgtagttcacgttaaccatggtatcgctcgctatgtcggcatg
gaaacgctagatatcaacggcgtgcataaggattatttgctacttgtttaccaaggggag
gataaactatttatccctgttgaccaacttgacttagtccaaaaatatgttggggcagaa
ggtaaatcaccaagattaaacaaactcggcggggctgaatggaaacgagtgaagaaaaaa
gtacaagcttccgtccaagatatcgcagacgatttaatcaaactatacgccgaacgtgaa
gctgaaaaaggctatgcgtttagcgcagatgatgaaatgcagcgcgaatttgaagaagct
tttccgtatcaagaaaccgaagatcaactgcgctcaatttcagaaatcaaaaaagatatg
gaacggccgcgcccgatggatcgtctgttggttggagatgttggttacggaaaaaccgaa
gtggctttgcgagctgctttcaaagcgattatggatggcaaacaagtcgctttcttagtt
ccgaccaccattttagcgcaacaacattttgaaacaatgaaagaacgtttccaaggcttt
ccaatagagattggacttttaagccgttttcgcacgaaaaaacaacaaacagaaacatta
aaaggcatgaaaaacggcacagttgatgttgttgttggtacccatcgtttgctatcaaaa
gatgtggaatatcaagatttaggtttattgattgtcgatgaagagcaacgattcggcgta
actcacaaagaaaaaatcaaacaaatgcgttccaaaatagacgtattaacacttactgca
acaccgattccaagaactttacacatgtccatgctcggcgttcgtgacctctctgttatc
gaaactccgccagcgaaccgttttccagtgcaaacatatgtggcggagcagaataacgtt
ttagttcgagaagcaattgaacgtgaactagcgcgcgacggacaagtttattatctatat
aatcgagtggaatccattacgcaaaaagcagatgaaatttctgcgatggttcctgatgct
agggttgccactgcgcacggacagatgggtgaatcggaattagagtctgttattttaagt
ttccttgaaggggaattcgatgtacttgtaacgacgaccatcattgaaaccggcgtagac
attccaaacgttaatacactctttgttcaagatgctgatcggatgggtctttcacaactt
tatcagttgcgcggacgagtaggacgttggaacagaatcgcctacgcttatttcatgtat
caaaaagataaaatattgcgtgaggaagcggagaaacgcttatcggctattaaggaattc
actgaattaggttcaggtttcaaaatagcgatgcgtgacttatctattcgtggtgccggt
aatatcctcggagcgcaacaacatggctttatcgattcagtcgggtttgatctctactcg
caaatgcttaaggaagcaattgaggcgaaaaagccaaaagaagaacaaaaacaaattgtc
cctgttgaaattgatatccaagcagacgcctatattccggaatattatatcactgacgga
cgccaaaaaatcgagatgtacaaacgtttccgcaatattgaaacgttaagcgaactcgaa
gatttacaaagcgatatgattgaccgttttggtgaatatccggaagaagtagaatatcta
ttcacaatgacagaactcaaagtccatgcgctcgaagttggtattgagtctgttaaacaa
gaacaaaataaaattaccatgctattttcagaaagtggaacagcaggcattcgcggagat
atcgtcatgcaaatcattggtgaatttggtcgaatggtcggcgtgggtatggaaggaaca
caactaaaaatcacgataaacgtccaaaataaacctttaaaagaatggttataccaagtc
aaaagtttggctgaaaaacttcgcggagctatgaaagaaaaagcatctacagaaaattga
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