KEGG   Listeria monocytogenes SLCC2755 (serotype 1/2b): LMOSLCC2755_0212
Entry
LMOSLCC2755_0212  CDS       T02219                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
lmw  Listeria monocytogenes SLCC2755 (serotype 1/2b)
Pathway
lmw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lmw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LMOSLCC2755_0212 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lmw03400]
    LMOSLCC2755_0212 (mfd)
Enzymes [BR:lmw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LMOSLCC2755_0212 (mfd)
DNA repair and recombination proteins [BR:lmw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      LMOSLCC2755_0212 (mfd)
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD CarD_TRCF_RID Helicase_C ResIII MFD_D3 RecG_dom3_C UB2H dATP-dGTP_PPHyd IstB_IS21 DUF267
Other DBs
NCBI-ProteinID: CBY47804
LinkDB
Position
217376..220915
AA seq 1179 aa
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNL
YHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV
PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI
IDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIV
KRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDY
FPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEANHSPK
IYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERA
EKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKI
KKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGE
DKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAERE
AEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTE
VALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETL
KGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLY
NRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVD
IPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEF
TELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIV
PVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYL
FTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGT
QLKITINVQNKPLKEWLYQVKSLAEKLRGAMKERASAEN
NT seq 3540 nt   +upstreamnt  +downstreamnt
ttgaaaggattacaacaattaatatatgaacaaaaagatattcgagcggtcttaaatgcg
ctggatgaaaaagaaaaagcacaacttgtcacagggctcacaggttcttcacgtgcgtta
tttgcaagcgtggtagaaggtgcgtcaaagcgtccggttgtatttgttacgcacaattta
taccatgcgcaaaaattatatgatgatttactttctttaatggatgtcgatcgactattt
ttatatccagcagatgaactgatttcttctgagttgagtatctctagcccggaacttcgc
ggtcaacgcgtggaagcgctcgacttcttactatccggaaaaccggggatagtcattgtg
ccagttgctggtctcagaaaaatgcttccaccagtatcgctttggaaacatttcaacata
tccattgtagagggcgaagaaattgatccagatgtactacgccaaaaactagtgacaatg
ggctacacaatgagcggaatggtaaatacgccgggagaattcagtgttcgcggcgggatt
attgatatttatccaattacagaagaatttccaattagaatagaactttttgacaccgaa
gtagattctcttcgtttctttgatgtggaaacgcagcgctcgacaacccgcgtggaagaa
ttccgcctactgcctgcaactgaaatcattttagatcaaagctattatccggatatcgtc
aaacgcttagaaaagaaaatgacacatactttaaatgaattgaaagaaaacgaggataaa
caagcgctcgttgaaaatttagaagaagatctggaaatgcttcgttctggcgtgaaacca
gacatgttctttaaatatatcggtctggcttatcctgacccagcctcgctttttgattat
tttccaaaaaacacggcaattttgcttgatgaatttgggcggattttagaaacggaagaa
agcttggagcgggaagaagcggagtggcaaacagaaacattaagtcgaatggaaacggtt
cgcgacgtgcaagtaagtcattctttcaaaaagctattagaagcaaatcactcgccgaaa
atatacttatcccttttccaaaaacaaatggcgagcatgcgcgtctcgaaaacaactaac
atcgtctataaacaaatgcagcaatttcatggccaaatgaatgtgttgaaaaccgagcta
gaaagttggcataagaataattatgccgttgttattttagccccaaaccttgagcgcgcc
gaaaaaatgcaacaaactttaactgactacgatatggaaagtacgattttgaaaaaagaa
tcggatgtgccgaaatatggaatggttcagtttgtcatcggaacgttccagaatggtttt
gaacttccattagctaaagtagcgattataagtgaaaccgaactgttcaataaaaaaatc
aaaaaagtgaagaagcgccaaaagctctcgaatgcagaacgaatccaaagttactctgaa
ttaaaagtaggtgactacgtggttcatgtgaaccatggtatcgctcgttatgttggcatg
gaaacgctagatatcaacggtgtgcataaagattacttgctacttgtttaccaaggagag
gataaactatttatccccgtcgatcaacttgatttagttcaaaaatatgttggtgcagaa
ggtaaatcaccaagattaaacaaacttggtggcgctgaatggaagcgagtgaagaagaaa
gtacaagcttccgtccaagatatcgcagacgatttaatcaaactatatgccgaacgtgaa
gctgaaaaaggctatgcgtttagtgcggatgatgaaatgcagcgcgaatttgaagaggct
ttcccgtatcaagaaaccgaagaccaactgcgctcgatttcagaaatcaaaaaagatatg
gaacgaccgcgcccgatggaccgtctgttggttggagatgttggttacggaaagaccgaa
gtggccttacgagctgctttcaaagcaattatggatggcaagcaagtcgccttcttagtt
ccgaccaccattttagcgcaacaacattttgaaacaatgaaagaacggttccaaggtttc
ccaatagaaatcggacttttaagccgtttccgaacaaagaaacaacaaacagaaacatta
aagggtatgaaaaacggcacagtcgacgttgttgttggtacccatcgtttattatcaaaa
gatgtggagtatcaagatttaggcttattaattgtcgatgaagaacaacgattcggcgta
actcataaagaaaaaatcaaacaaatgcgttccaaaatagacgtactaacacttactgca
acaccaattccaagaactttacacatgtccatgctcggcgttcgtgacctctctgttatc
gaaactccgccagcgaaccgttttccagtgcaaacatatgtggcggagcagaataacgtt
ttagttcgggaagcaattgaacgtgaactagcgcgcgacggacaagtttattatctatat
aatcgagtggaatccattacgcaaaaagcagatgaaatttctgcgatggttcctgatgct
agggttgccactgcgcacggacagatgggtgaatcggaattagagtctgttattttaagt
ttccttgaaggggaattcgatgtacttgtaacgacgaccatcattgaaaccggcgtagac
attccaaacgttaatacactctttgttcaagatgctgatcggatgggtctttcacaactt
tatcagttgcgcggacgagtagggcgttggaacagaatcgcctacgcttacttcatgtat
caaaaagataaaatattgcgtgaggaagcggagaaacgcttatcggctattaaagaattc
actgaattaggttcaggtttcaaaatagcgatgcgtgacttatctattcgtggtgccggt
aatatcctcggagcgcaacaacatggctttatcgattcagtcgggtttgatctctactcg
caaatgcttaaggaagcaattgaggcgaaaaagccaaaagaagaacaaaaacaaattgtc
cctgttgaaattgatatccaagcagacgcctatattccggaatattacattacagacggc
cgccagaaaatcgagatgtacaaacgcttccgcaatattgaaacgttaagcgaactcgaa
gatttacaaagcgatatgattgaccgttttggtgaatatccagaagaagtagaatatcta
ttcacaatgacagaactcaaagtccatgcactcgaagttggcattgagtccgtcaaacaa
gaacaaaataaaattaccatgctattttcagaaagcggaacagcaggcattcgcggagat
atcgtcatgcaaatcattggcgaatttggccgaatggtcggtgtgggtatggaaggtaca
caactaaaaatcacgataaacgtccaaaataaacctttaaaagaatggttataccaagtc
aaaagtttggctgaaaaacttcgcggagccatgaaagaaagagcatctgcagaaaattga

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