Enterobacter sp. SGAir0187: CWR52_03510
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Entry
CWR52_03510 CDS
T05333
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lni
Enterobacter sp. SGAir0187
Pathway
lni03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CWR52_03510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lni03400
]
CWR52_03510
Enzymes [BR:
lni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CWR52_03510
DNA repair and recombination proteins [BR:
lni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CWR52_03510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AVH16314
LinkDB
All DBs
Position
727521..730967
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR
QFTDNLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPD
LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKTESELEEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgttattccttgcctgtcaaagcgggcgaccagcgccagctgggt
gaactcacgggcgcagcgtgcgccacgctggtggcggaaatcgccgagcgtcatcctggc
ccggtgatcctggttgccccggatatgcaaaacgccctgcgcctgcacgacgaaattcgc
cagttcaccgataatctggtgttcagcctggccgactgggaaacgctgccctatgacagc
ttctctccgcaccaggagatcatctcctcgcgcctgtcgacgctctatcaactcccgacc
atgcagcgcggcgtgctgattgtgccggtgaataccctgatgcagcgcgtctgtccgcac
agctatctgcacggtcacgcgctggtgatgaaaaaaggccagcgcctgtcccgagatgcc
ctgcgggcgcagcttgacggtgccggctatcgccacgtcgaccaggtcatggagcacggg
gaatacgcgacccgcggcgcgctgctcgacctttacccgatgggcagcgaccagccgtat
cgtctggactttttcgatgatgaaatcgacagcctgcgcgtctttgacgccgacacgcag
cgcacgctggaggaagtggagtccatcaatttactgcccgcacatgagttcccgacggac
aaaaccgctatcgaactgttccgcagccagtggcgcgataagttcgaggtgaagcgcgac
gcggaacatatttatcagcaggtcagtaaaggcacgctgcctgccgggatcgaatactgg
cagccgctgttcttcagcgagccgctccctgccctgttcagctacttcccggcgaatacc
ctgattgttaacaccggggatatcgacgccagcgccagccgctttgaaagcgaaacccgt
gctcgcttcgaaaaccggggcgttgacccgatgcgcccgctgctgccgccggaagcgcta
tggctgcgtaccgacgagctcaacgccgagctgaagcgctggccacgcatgcagctgaaa
accgattcgcttgccgataaggccgccaacaccaacctcgccttccggacgctgccggac
ctggccgtccaggcgcagcagaaatccccgctggataatctgcgcaagttcctggagtcc
tttaccggcccggtggtgttctccgttgagagtgaaggccgtcgcgaagcgttaggtgag
ctgctgggacgcattaaggtggcgccgaagcgcatcctgcgcctgagcgaagcgaccgga
aacggccgttacctgatgattggcgccgccgagcatgggttcatcgacacgctcaacaac
ctggcgctgatttgcgaaagcgacctgctgggcgagcgcgtcgcgcgccgtcgtcaggac
agccgtcgaaccatcaacccggacacgctgatccgcaacctggccgagctgcatccgggc
cagccgattgttcacctggagcatggcgttggacgctatcaggggatgaccacgttggag
gcgggcggcattaaaggtgaatacctgatgctgacctacgctaacgacgccaaactgtat
gtcccggtgtcgtccctgcatctgatcagccgctacgcgggcggtgctgaagagaacgcg
ccgctgcacaagctgggcggcgatgcctgggcgcgcgcgcgccagaaggccgcggaaaaa
gtgcgcgacgtggccgccgagctgctggatatctacgcccagcgcgcggccaaagagggc
ttcgcgtttaagcatgataaggaacagtatcagctgttctgcgacagcttcccgtttgaa
accacgccggatcaggctcaggctattaacgccgtgctgagcgacatgtgccagccgctg
gcaatggaccgcttagtctgcggcgacgttggcttcggtaaaaccgaagtggcgatgcgc
gccgccttccttgcggtggaaaacaacaagcaggtggcggtactggtgccgaccaccctg
ctcgctcagcagcacttcgacaacttccgcgaccgcttcgccaactggccggtacgcatc
gagatgctgtcacgttttcgcagcaccaaagagcagacgcagatcctggagcaggcaagc
gaaggcaagattgatattctgatcggcacccataagctgctgcaaagcgacgtgaagtgg
aaagatttggggctgctgattgtcgacgaagagcaccgcttcggggtgcgccataaagag
cgcatcaaagcgatgcgtgccgacgtcgatatcctgaccctgaccgcaacgccgatcccg
agaaccctgaacatggcgatgagcggcatgcgcgatctgtcgattatcgccacgccgccg
gcgcgccgtctggcggtgaaaaccttcgtccgcgagtacgataatctggtggtgcgtgag
gccattctgcgtgaagtgctgcgcgggggtcaggtctattacctgtacaacgacgtggaa
aacatccagaaagcggccgacaggctggcggagctggtgccggaggcgcgcattgctatc
ggtcacgggcagatgcgcgagcgcgagctggaacgggtgatgaacgacttccaccaccag
cgctttaacgtgctggtgtgcaccaccatcatcgaaacggggatcgacattccgacggcg
aacaccatcatcattgaacgtgcggatcactttggtctggcgcagcttcaccagctgcgc
ggccgcgtcggacgttcgcaccatcaggcttacgcatggctgctgacgccgcatccaaaa
gcgatgaccaccgacgcgcaaaagcgtctggaagccatcgcctctctggaagacctcggt
gcaggcttcgcgctggccacgcacgatctcgagatccgcggtgccggtgaactgctgggt
gaagaccagagcggctcgatggagaccatcggcttctcgctctatatggagctgctggaa
aacgcggttgatgctcttaaggccgggcgcgagccgtcgctggaagatctcaccagccag
cagaccgaggtcgagttgcgcatgccttctctgctgccggacgattttattccggacgtg
aatacccgactgtcgttctacaagcgcatcgccagtgcgaagacggaaagcgagctggaa
gagattaaggttgagctaatcgaccgctttggtctgctgcccgatgcggcgcgaaatctg
ctggatatcgctcgcctgcgccagcaggcgcagaagctgggcattcgcaagcttgaaggc
aacgaaaaaggcggcgtgattgaattcgcggagaagaaccacgtcaacccgatgtggctc
atcggtctgctgcaaaaacagccgcagcatttccgtctggatggcccaacgcgtctgaaa
ttcacccaggaactgacggagcgcaaaacccgtatggactgggtgcgtaactttatgcgt
cagctggaagagaacgcgatcgcctga
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