Lacticaseibacillus rhamnosus LOCK908: LOCK908_1139
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Entry
LOCK908_1139 CDS
T02731
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lrc
Lacticaseibacillus rhamnosus LOCK908
Pathway
lrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOCK908_1139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrc03019
]
LOCK908_1139
03400 DNA repair and recombination proteins [BR:
lrc03400
]
LOCK908_1139
Enzymes [BR:
lrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOCK908_1139
Messenger RNA biogenesis [BR:
lrc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOCK908_1139
DNA repair and recombination proteins [BR:
lrc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOCK908_1139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
AGP73780
LinkDB
All DBs
Position
1098916..1100697
Genome browser
AA seq
593 aa
AA seq
DB search
MLLPQPATILKEKFGYDHFRAGQKQAIERIMTGKSTLVVMPTGGGKSLCYQVPAMILPGL
TLVVSPLIALMKDQVDALNDNAIPAAFINSTLDYREITARLEQARSGNIKLLYVAPERFD
ADWFLQQLGDMNISLFAIDEAHCISQWGHDFRPSYLNLANVAAQLPSQPPVIALTATATP
RVAQDICQRLMIPDDGVINTGFERDNLSFKVVRDQDEDRYLLDYLKLNVDQSGIIYASTR
KEVDRIYAFLQHKQLPVAKYHAGMTEKQRAANQEDFLFDRKPIMVATNAFGMGIDKSNVR
FVIHAQIPKDLESYYQEAGRAGRDGLPSEAILLFRPQDLQVQRFFIEQSEGDEAHQRRQY
DKLKIMERYANTDQCLQQFILNYFGQTGTAPCGRCSNCLDDRESVDVTIDAQKVLSCVVR
LHERFGKGVVAQVLAGAHNQRVLSFHLDQLSTYGLMKNRRQRDITTFIDFLTAGGFLETR
GGQYPTLGLTAKGAEVLRGQTTVFQKTAQKVTQTLEVDDTVFQELRSTRRQLAEQQHLPP
YMIFSDKTLKAIGNAMPKTLDELLAVKGVGQAKLDKYGQIFLDVLQAIQTEKA
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgcttttgccgcagccagcgacgattttaaaagaaaaatttgggtacgatcactttcga
gccggtcaaaagcaggcaattgagcgaattatgaccggtaagagcacgctggtcgtgatg
cctaccggtggcggcaagtctttgtgttatcaggtgccggcgatgattctgccgggcttg
acgctggtcgtttcgcctttaatcgctttaatgaaagatcaagttgatgcgttaaacgac
aatgccattccggcggcgtttattaatagcacgttggattatcgtgaaattactgcacgt
ctggaacaggcgcgcagtgggaacattaagttgttatatgtggcgccggaacggtttgat
gcggattggttccttcagcagctcggtgacatgaatatctcgctttttgctattgatgaa
gcccactgtatttcacagtggggacatgattttcggccgagttatctcaacttggctaac
gttgcggctcaattaccctcgcagccgccggtcattgccttaactgcgacggcgacaccg
cgggttgctcaagatatttgccaacgcttgatgatcccggacgatggggtcatcaacaca
gggtttgaacgtgacaacctgagtttcaaagtggtgcgcgatcaggatgaggatcggtac
ttgttggattatctaaaactcaatgttgatcaatccggcattatttatgcaagtacgcgc
aaagaagtcgatcggatttatgcgtttttgcagcataagcagttgccggtagccaaatat
cacgccggcatgactgaaaagcaacgtgctgctaatcaggaagactttttgtttgatcgt
aagccgattatggtcgctaccaacgcgtttgggatggggattgataaaagtaacgttcgc
ttcgtgattcatgcccagattcccaaagatttggaatcgtattatcaagaagcaggtcgc
gccggtcgtgatgggttgcctagtgaggcgatcttgttatttagaccgcaagacttgcag
gtgcaacggttttttattgaacagtctgaaggtgacgaggcgcatcaacggcggcagtat
gacaaactgaaaatcatggagcgctatgccaataccgatcagtgtctgcagcagtttatt
ttgaactattttggtcagactggcactgccccgtgtggacgttgttcgaactgcctagat
gatcgtgaatccgttgatgtgaccattgacgcgcaaaaggttctgtcatgtgttgttcga
ttgcacgagcgattcgggaaaggcgttgttgcccaggtcttggctggtgcgcacaatcaa
cgcgtcttgtcgtttcatctcgatcagttgtcaacatatgggctgatgaaaaatcgccgg
cagcgggatattacgaccttcattgatttcctgacggccggtggctttctggaaacgcgt
ggtggtcagtatccaacgcttggcttaaccgcaaaaggtgctgaagtgttacgcggacag
acaactgttttccaaaagaccgcgcaaaaagttactcagacgcttgaagttgatgacaca
gtcttccaagaactgcgcagtactcgccggcaactggcggagcagcagcatttaccgccg
tatatgattttttccgataagacgttaaaagcgattggcaatgcgatgccgaaaacgttg
gatgagttgctggcggttaaaggagttggccaggcgaaacttgataagtatgggcagatt
ttcttggatgtgttgcaggcgattcaaacggagaaagcgtga
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