Limosilactobacillus reuteri subsp. reuteri JCM 1112: LAR_1425
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Entry
LAR_1425 CDS
T00735
Name
(GenBank) putative metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lrf
Limosilactobacillus reuteri subsp. reuteri JCM 1112
Pathway
lrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAR_1425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrf03019
]
LAR_1425
Messenger RNA biogenesis [BR:
lrf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAR_1425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
EF_assoc_2
DUF4453
DUF6080
Motif
Other DBs
NCBI-ProteinID:
BAG25941
LinkDB
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Position
complement(1606009..1607865)
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AA seq
618 aa
AA seq
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MTKLKIKNNEVAFYAMGGLGEIGKNMYCVQFQDEIIVIDCGVLFPEDELLGVDYVIQNYD
YLIENKDKIKGIFITHGHEDHIGGLPFFLQKVNAPIYAGPFAMSLIKGKLEEKHLLRNAE
LHEINEFDEVHFKKLWVSFFRTTHSIPDTLGVAVHTPQGTIVQTGDFKFDLTPVGNLPGP
NLQQMAKLGDDGVLLLTSDSTNAERPEFTKSERWVDIHIRRIFERIKGRIIFASFASNVY
RLREASDAAIAQGRKIAVFGRSMENAITAGQELGYLNIPKDSLIDQNEINNYPPEKVLIM
CTGSQGEPMAALSRIANGTHRQITIQPEDTVVFSSNPIPGNTTSVNALINKLEESGANVI
HGYVNNIHTSGHGGQVDEEFMLRLMKPKFFAPVHGEYRMQKIHTKLAEMTGVPKENSFVL
ANGDVLALTKDSCRVADHIDSVSDVYIDGRDAGDTVGNPEIRERRLLSEEGVVTAIAVVD
LKDYQIVAGPDIVSRGFVYMHESQELIKAANHEVFWAILNTFKNHKHIDQRVLNRTIISR
LQKLLYDRTGRRPVIIPMVTILNGNNRSENQHYRRPNNKNNQTHKNERQNNHSHRNSQQH
SKKKNSKEKQPVATGNTK
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaattaaagattaaaaacaatgaagttgccttttacgccatgggtggtcttggt
gagattggtaaaaatatgtattgtgtacaattccaagatgaaattattgttattgactgt
ggagttttattccccgaagatgaattactaggagtggattacgtaattcaaaattatgat
tacctcattgaaaataaagataagattaagggaatctttattactcacggtcacgaagac
cacattggaggattaccattcttcttacaaaaggtcaatgcacctatttatgctggacca
tttgcaatgtcattaattaaaggaaaactggaagaaaaacacttactaagaaatgccgaa
ttgcatgaaattaatgaatttgatgaagttcattttaagaagttatgggtgagctttttc
cgaacaacgcactcaattcctgataccctgggtgtggccgttcatactcctcaaggaacc
attgtccagactggtgactttaagtttgatttaacaccagttggtaatttaccaggtcct
aatcttcaacaaatggctaagttaggggacgatggggttctccttttaacatcagatagt
acaaacgctgaacgaccagaatttacaaagtctgaacgctgggttgatatccatattcgc
cggatctttgaacgaattaagggacgcattatctttgcctcatttgcatctaatgtttat
cgattgcgtgaagcatctgatgccgcaattgcgcaagggcgaaagattgcggtttttggt
cgcagtatggaaaatgcaatcactgctggtcaagaattagggtaccttaacattcctaaa
gattcacttattgaccaaaatgaaattaacaattatccaccagaaaaagtattgatcatg
tgtactggatcgcagggagaacctatggcagcccttagtcggattgctaatggtactcac
cgtcaaattactattcagccggaagatacagttgttttctctagtaacccaattccagga
aatactactagtgttaatgccctcatcaataagcttgaagagagcggggctaatgtaatt
cacgggtatgttaataatatccacacatcaggacacggtggtcaagtcgatgaagaattt
atgctacggttaatgaagcctaagttctttgctccggttcacggggaataccgaatgcaa
aaaattcacactaagttagctgaaatgactggtgtaccaaaggaaaatagctttgtcctt
gcaaatggggatgttttagctcttacgaaagactcttgtcgagtggcggaccatattgat
agtgttagtgatgtttatattgatggtcgtgatgcgggagatacggttggaaatccagaa
attcgcgaacgacgcttgctttcagaagaaggtgtcgtaacagcgattgcggttgtcgac
ttaaaggattatcaaattgttgcggggcctgatattgtttctcgtggctttgtttatatg
catgaatcacaagagctgattaaggcagccaatcatgaagtattctgggcaatccttaat
acatttaagaatcacaaacacattgatcaacgggtattaaaccggacaattatcagccgt
ttacaaaaattactctatgatcgcaccggtcgtcgtccagtgattattccgatggtgaca
attttgaacggtaataatcgttccgaaaaccaacactatcgtcgaccaaacaataaaaat
aatcaaacacataaaaacgaacgacagaataatcattcccaccggaactctcagcaacat
tctaaaaagaagaatagtaaagagaagcaaccagttgcaactggaaacacaaaataa
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