Ligilactobacillus salivarius JCM1046: LSJ_1103c
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Entry
LSJ_1103c CDS
T03340
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lsj
Ligilactobacillus salivarius JCM1046
Brite
KEGG Orthology (KO) [BR:
lsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsj03019
]
LSJ_1103c (srmB)
03009 Ribosome biogenesis [BR:
lsj03009
]
LSJ_1103c (srmB)
Enzymes [BR:
lsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LSJ_1103c (srmB)
Messenger RNA biogenesis [BR:
lsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSJ_1103c (srmB)
Ribosome biogenesis [BR:
lsj03009
]
Prokaryotic type
rRNA helicases
LSJ_1103c (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
SWI2_SNF2
Microtub_bd
AAA_19
Kinesin
Wzy_C_2
Motif
Other DBs
NCBI-ProteinID:
AIR10776
UniProt:
A0A089QIH0
LinkDB
All DBs
Position
complement(1107272..1108594)
Genome browser
AA seq
440 aa
AA seq
DB search
MANFREFNFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPI
FQNLNAQKDEVQAVITTPSRELAYQIYEAAKQLAKFSPEDIWIQNYVGGTDKQRQIEKLK
SHQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASALPKDLQ
MLVFSATIPEKLRPFLRKYMYNPVIEVVANKHIISPTIDNWLVSTKGRDRNKLIYDLLTM
GEPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQFVVAT
DLAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEKLIDELES
MGVHFVPKAVKNGEIVDSYDRNRREKRQTRKESMDPKLRGFVKKEKKKRKPGYKKKIKRA
IKRDEQQKRRIARRQARKMK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattttagagaatttaattttaaagagtatatttatcaagcattagacgaaatt
aattttaaagaacctactgaagttcaagctcgtttaattccgactattttaaagggcaag
agcgtggtaggacaatcacaaactggtagtggtaaaactcatacgttcttattacctatc
tttcaaaatcttaacgcacagaaagatgaagttcaggctgtgattacaacaccaagtagg
gaattagcataccaaatttatgaagcagcaaagcaactagcaaagttttctcctgaagat
atctggattcaaaactatgttggtggaacagataagcaaagacaaattgagaagctgaaa
tctcatcaaccacaattagtaattggaacaccaggacgtatattggatttagtgagagaa
aatgcacttgatatccacaatgctcactatttagtagtggatgaagcagatatgacattg
gatttaggatttttaaaagaaacagatgcaatagcatcggcgttacctaaagacttacaa
atgctagtcttttcagctactattccagaaaaattacgtccgtttttaagaaaatatatg
tacaatccagttattgaagttgttgctaacaaacatataattagtccaacaattgataat
tggttagtttcaactaaaggtagagacagaaataagcttatttatgacttgctaacaatg
ggtgaaccttatttagcattagtatttgcaaatactaaagaacgagctgatgagttaaca
aattatcttcgttctcaagggttgaaagtagctaaagttcatggtggtattcaacctcgt
caacgtaagcgaattatgcgtgaaattcaaaatcttgattatcaatttgtggtagctaca
gatttagcggctcgtggaattgatattgaaggtgtttcacatgttatcaatgacgacatc
cctgaagatttagaattctttgtgcatcgtgtaggtagaactggacgtaatggaatgaaa
ggtacagcaattacactttatgaaccaagtgaagaaaaattaattgatgaacttgaaagt
atgggagttcattttgtaccgaaagcagttaaaaatggtgaaatagttgattcatatgat
cgtaatcgtcgtgaaaagcgccaaacacgtaaagaatcaatggatcctaaattacgtgga
tttgtgaagaaagaaaagaaaaaacgtaaacctggttataaaaagaaaattaagcgagca
ataaaacgtgatgaacaacaaaagcgtcgaattgcacgtcgtcaagcaagaaaaatgaag
taa
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