Microbulbifer agarilyticus: Mag101_04345
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Entry
Mag101_04345 CDS
T04709
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
maga
Microbulbifer agarilyticus
Pathway
maga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mag101_04345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maga03019
]
Mag101_04345
03009 Ribosome biogenesis [BR:
maga03009
]
Mag101_04345
Enzymes [BR:
maga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mag101_04345
Messenger RNA biogenesis [BR:
maga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mag101_04345
Ribosome biogenesis [BR:
maga03009
]
Prokaryotic type
rRNA helicases
Mag101_04345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrA_inter
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AQQ66953
UniProt:
A0A1Q2M2K6
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All DBs
Position
1056882..1058738
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AA seq
618 aa
AA seq
DB search
MTDTPTATGFDQLGLPAEILDAVTKLGYETPSPIQAKTIPSLLEGRDVLGQAQTGTGKTA
AFALPLLASLDLKNKRPQALVLAPTRELAIQVAEACQSYAANLKGFHVAPIYGGADYRGQ
IQQLKRGVQLVVGTPGRVMDHMRKGTLDLSNLKTLVLDEADEMLRMGFIDDVEWVLEQIP
EERQIALFSATMPREIAKIARDHLDNPVDVKIKVKTETAETIRQRYWPVGGLHKLDALTR
ILEAEPVDATIIFVRTKNTTVELADKLAARGFASSALNGDMAQNLREQVIDKLKAGKLDI
VVATDVAARGLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPRERRMLR
VIERATKKSIERLELPTAKAVNASRMEKFRQRISDTLGGEGDLAPFRDLVDQFLADNEVD
PLDVAAALAAMAQGDQPLLLDEREPKQRDFNDRNDRDDRRRDRDGDRKRERKGGYEKDKR
MPPPDEGKERFRIDVGREHGVRPGSVVGAIANEVELDSSYIGRIEIYPEYTTVDLPEGMP
KEIFQHLKKVRVNGRPMNIAKYDPNTADSGKPFKKSGSFKKRKFEGKPEGKHGGKHGGKH
GDKPHHKSGKPKQHRDRD
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatacccccacggccactggctttgaccagttgggcctgcccgctgaaatcctc
gacgctgtcaccaaacttggctatgaaaccccatctccgattcaggcaaagactatcccg
tctctgctggagggtcgcgatgtgctgggccaggcacagacaggaacgggcaaaacagcg
gcattcgcgctccctctgctggcgagcctggacctgaagaacaagcgccctcaggcactg
gtgctggcacccacccgagaactggccattcaggtggccgaggcctgccagtcctacgcg
gccaacctcaaaggtttccacgttgcgcctatttatggcggcgctgactaccgcggccag
atccaacaactgaagcgcggtgtgcagctggtagtgggcaccccgggccgtgtgatggac
cacatgcgcaaaggcaccctggacctgtctaatctgaagaccttggtcctcgacgaagcc
gacgaaatgctgcgcatgggctttatcgatgacgtggagtgggtactggagcagattcca
gaagagcgccagatcgcgctgttctccgccaccatgccgcgcgagatcgccaagattgcc
cgcgaccacctggacaacccggtggacgtcaagatcaaggtcaagaccgagaccgcagaa
accattcgccagcgttactggccggtgggcggcctgcacaagctggacgcactgacccgc
attctcgaagccgagccggtggatgccaccatcatcttcgtgcgcaccaagaacaccacc
gtggaactcgccgacaaactggccgcacgtggttttgcctcttccgccctgaacggggat
atggcgcagaacctgcgtgagcaggtgatcgacaagctgaaagccggcaagctggatatc
gttgtggccaccgacgtggccgcccgtggcttggatgtgaagcgcatcagtcacgtgatc
aactacgacatcccttacgacaccgaagcctacatccaccgtattggccgtactggccgt
gcgggacgtgaaggtgatgcaattctgtttgtggccccgcgtgagcgtcgcatgctgcgc
gttatcgagcgcgcaaccaagaagtcgatcgagcgtttagagttgccaacggcgaaagcg
gtcaacgcatcgcgtatggaaaaattccgccagcgtattagcgataccctcggtggtgaa
ggtgacctggcgccgttccgcgatttggttgatcagttcttggcagacaatgaagtggac
ccgctggatgtggccgcggctctggctgccatggcgcagggcgatcagccgctgctgctg
gacgagcgtgagccgaagcagcgtgactttaatgatcggaatgaccgcgacgaccgccgc
cgcgatcgcgatggcgaccgcaagcgcgaacgcaaaggcggttacgaaaaagacaaacgt
atgccgccgcctgatgaaggcaaagagcgtttccgcattgatgtgggtcgtgagcacggc
gtgcgcccgggcagcgtggttggtgctattgccaacgaagtagagctggacagctcttac
attggtcgcatcgaaatctacccggaatacaccaccgtcgacctgccggaaggtatgccg
aaagagatcttccaacacttgaaaaaggtgcgggtaaacggtcgcccgatgaacattgcc
aagtacgacccgaatacggcagacagtggaaaaccgttcaagaaaagcggttccttcaag
aaacgcaagtttgaaggtaagcctgaaggcaaacatggtggtaaacacggcggtaagcat
ggtgataagccgcaccacaagtctggcaagccaaagcagcatcgcgatcgcgactga
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