Methanosarcina barkeri Fusaro: Mbar_A1171
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Entry
Mbar_A1171 CDS
T00271
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mba
Methanosarcina barkeri Fusaro
Pathway
mba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mbar_A1171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mba03019
]
Mbar_A1171
03400 DNA repair and recombination proteins [BR:
mba03400
]
Mbar_A1171
Enzymes [BR:
mba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mbar_A1171
Messenger RNA biogenesis [BR:
mba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mbar_A1171
DNA repair and recombination proteins [BR:
mba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Mbar_A1171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
Helicase_Sgs1
ResIII
Motif
Other DBs
NCBI-ProteinID:
AAZ70139
UniProt:
Q46DA3
LinkDB
All DBs
Position
1:complement(1437694..1440339)
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AA seq
881 aa
AA seq
DB search
MPSLSARMYSALHQYFGYTSFRPLQEEIIKDVLERKDVFVLMPTGGGKSMCYQLPALLME
GVTVVVSPLISLMKDQVDGLEANGIAAACMNSAQSARENRDVKTAFLENRLKVLYVAPER
LMMPGTLAFLKKGKVSLLAIDEAHCISEWGHDFRPEYRKLKLLRDPKTGFPDIPIIALTA
TATERVREDIISQLNLHLPPEKGPYVASFNRKNLYYEVRPKKETFSEITDYLRRHRGEAG
IIYCQSRNSVEALTKKLNLAGFRALPYHAGLSDTERNRNQEMFIKDDVEIIVATIAFGMG
IDKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFISQKTNEK
EKDISLVQLRQMVAYCEGNKCRRQTLMEYFGEELSEPCGNCDCCLTPKDTFDGTEAAKKF
ITCVQELNQRFGTNYVIDVLTGSKNKKIRHNRHERLKSHGSGLEFTKEQWKSLASEMINT
GLLDVSGTKYPLLKLNAMSRKILKGLEQVELVCPEGFVPEAEESFMPSTVAGTKGKKADD
LSSSEEEVFPEKFSVASDILKASEARKTIISEKEPDPILFERLKALRKKISLKRNLPPYI
VFSDTSLKEMATRFPHNLEEFHSITGVGEHKLRKYGDIFLKEIENYCRDYSLVPAEKPAD
KPAEKPEQLEVACKDSEQEGISSKEIVQNDENPKAEVEIFGTKMSDPESDTINSLEACNL
QAKKTRYLDTSIQDWSERNSSACGFREIDSATISPELEASSVTRADSPTSGSFETDSLQR
TFSLFTKGLGIDEIADIQGTNTRAIFRQLEQLTLSGNVKGIGGLLPPERQKQINATLKSL
EIELDSLLRTRLGENCQEEEMKFIRALLLSRICYSQSEDGK
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgccttccctgtccgctagaatgtattcagccctgcaccagtattttggatacacttcc
tttcgcccattgcaggaggaaattatcaaggatgttctggagaggaaagatgttttcgtg
ctcatgcctaccggcgggggcaagtcgatgtgttatcagttgcctgcccttctcatggaa
ggcgttactgttgttgtgtctcctctgatttccctgatgaaagaccaggttgacgggctt
gaagcaaacgggattgctgcagcctgcatgaacagtgcccagagcgccagagaaaacagg
gatgtaaaaacggcttttctcgaaaaccggttaaaagttctttacgttgctcctgaaagg
cttatgatgccaggaacccttgcctttttaaagaaaggaaaggtcagcctcttggcaatc
gacgaagcgcactgcatttccgagtgggggcatgatttccggcctgagtacaggaaattg
aaacttttgagggatcctaaaacaggctttcctgatatcccaattattgcgcttacggca
acagccacagaaagggttcgagaagatatcatatcacaactcaatcttcatcttcctccg
gaaaaaggtccttacgtagccagttttaaccggaaaaacctttactatgaagtcaggcca
aagaaagagactttttccgagattactgactacctgcgcaggcatagaggtgaagcagga
attatttactgtcagagtcgaaatagtgtcgaagcacttacaaaaaaactgaaccttgcg
ggtttcagggcccttccctaccatgcgggtctttcggataccgagagaaaccgaaaccaa
gagatgttcataaaagatgacgtggaaatcatagtagctacaatcgcttttggaatgggg
attgataagtccaacgtacgttttgtaatacactatgaccttcccagaaatcttgagagc
tactatcaggaaaccggtagaggaggaagggatggaagcccatgcgaatgtatccttttt
ttcagcaggggggaccgtttcaagattgagtactttatttcacagaagacaaatgaaaag
gagaaggacatttctctagtgcagttaaggcaaatggtagcttattgcgagggaaataaa
tgcaggcgtcagaccttgatggagtactttggtgaagagctctcagaaccctgcgggaat
tgtgactgctgccttactccgaaagatacctttgacggaactgaagctgcaaaaaaattt
ataacctgcgtccaggaactgaaccagcgctttggtactaactatgttattgatgtcctc
acaggctcaaagaataaaaaaatccggcacaaccgtcatgaaaggttgaaaagtcatggc
agtggcctggagttcacaaaagaacaatggaaatcattagcttccgaaatgataaacacc
ggtcttctggacgtaagtgggacaaagtatcctttattgaagcttaacgccatgagcaga
aaaatactgaaaggtctggaacaagtagaacttgtctgccctgaaggctttgttcctgaa
gctgaagaaagtttcatgccttctacagtggccggtacaaaaggcaaaaaagccgacgat
ctaagttcctctgaggaagaggtttttccagaaaaattttcagttgcttctgacatcctg
aaagcgtcagaggcgagaaaaactataatatccgaaaaagagcctgaccccatccttttt
gagcggttaaaagctctgagaaagaaaatttctctaaagagaaatcttcctccttacatt
gttttctctgatacttcccttaaggaaatggctacaagatttccgcataaccttgaagag
ttccattctattacaggagttggagaacataagctaaggaaatacggggacatttttctc
aaggaaatcgaaaactactgcagagattacagtttggttcccgctgaaaagcctgctgac
aaacctgctgaaaaacctgaacaattagaggttgcttgtaaagactctgaacaagaagga
ataagctcgaaagaaattgttcaaaatgatgaaaatcccaaagctgaggtcgagatattc
gggactaaaatgtccgatcctgagtctgacaccatcaacagcttggaagcctgcaactta
caggcaaaaaagacaaggtatctggatacgagcattcaggattggtcagagcggaattct
tcagcatgcggcttcagggaaatagattcggcaacgatctcgcctgagttagaggcttca
agtgtcaccagagcggattctcctacctccggttcttttgaaacggattctctgcaaaga
actttctctctttttacgaaagggcttggaatcgatgaaattgctgacatccagggcacg
aatactagagccattttcaggcaacttgaacagctcactctttctggaaacgtcaagggt
attggaggacttttacctcctgaaagacaaaagcagataaatgctaccctgaaaagctta
gaaattgagctggattccctgcttcggacaagattgggtgaaaactgccaggaagaagaa
atgaaatttatcagggctctccttctgtccagaatctgctattctcagtctgaagacggt
aagtaa
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