KEGG   Methanosarcina sp. WH1: MSWH1_1448Help
Entry
MSWH1_1448        CDS       T03851                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mef  Methanosarcina sp. WH1
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:mef00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    MSWH1_1448
   03410 Base excision repair
    MSWH1_1448
   03420 Nucleotide excision repair
    MSWH1_1448
   03430 Mismatch repair
    MSWH1_1448
Enzymes [BR:mef01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSWH1_1448
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSWH1_1448
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSWH1_1448
DNA replication proteins [BR:mef03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MSWH1_1448
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MSWH1_1448
DNA repair and recombination proteins [BR:mef03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSWH1_1448
   NER (nucleotide excision repair)
    Other NER factors
     MSWH1_1448
   MMR (mismatch exicision repair)
    Other MMR factors
     MSWH1_1448
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1755284..1756990
Genome map
AA seq 568 aa AA seqDB search
MTSFREFAETCQAIEKISSTIETTNKVADLLKKVDVEELPLATHFIMSEVFPAWSGEQLG
IGTSLLYVSLSKASGMSIQSIESLIRTTGDIGDTALLILKEKRKNQVTFSSFLEEQPELS
ITEVYQRFKTASEASGKGSQEVKVRNLQFLFTSSTPREAKYISRLALEELRIGVGEGVVR
DAIAKAFSVPAEVVEHSFMVTNDLGIVAAAAKKGGIESLKSLGIEINRPIKMMLSQISPD
IDADIRDMKEAAIEWKFDGARVQIHKSGNSVTLFSRKLENVTNSLPDLVEIVRKHVKAES
AILDGEAVAVDENGRPKAFQEILKRFRRKYDVEEKMLGIPIQLNLFDIMYLNGKTLIDFP
LVERRKALESCVESSVENSKSICVDEQVITGDLEVVEKIYREALRAGHEGVMVKNPNSLY
SPGKRGKNWLKKKPLMETLDLVVVGAEWGFGRRANLIGSYSVACYDPETSRFMQVGKVGT
GLTDEQLKELTEMLSGLMEGGETGGVFAIRPKVVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKDPEEADTIQRIRRVYSQQLKRL
NT seq 1707 nt NT seq  +upstreamnt  +downstreamnt
atgacaagcttcagggaatttgcagaaacctgccaggcgattgaaaagatatcgagcact
atagaaactacaaataaggttgctgaccttctcaaaaaggttgatgtcgaagagcttcct
cttgcaactcactttatcatgagtgaggtttttcctgcctggagtggagagcagctcggg
attgggacaagtttgctttatgtttccctttccaaagcctcaggcatgtctatacaaagt
atagaatctcttatacggaccactggagacatcggggatacagcactccttattttaaag
gaaaaaagaaaaaatcaggtgacattttcttctttcctcgaagagcagccagagctttca
ataactgaggtttaccagcgtttcaagacggcttcagaagcttcgggaaaaggatcacag
gaagttaaggtcagaaaccttcagtttctatttacttcatcaaccccgagggaggcaaaa
tacatttccaggcttgctcttgaagaactccgcataggcgtaggagagggagttgtcagg
gatgccattgctaaagctttttccgtccctgcagaggtggtggaacattccttcatggtt
acaaatgatctcgggatagtggcggcagctgccaagaaaggcgggatagaatccctcaag
agtctcgggatagaaattaaccgccccataaaaatgatgctttcgcagatcagccctgat
atagatgccgatatcagggatatgaaagaagctgcaattgagtggaaattcgacggggca
agagtccagatccacaagagcggaaattctgtcactcttttttcacgcaagcttgaaaac
gtcacaaattccctccctgaccttgtcgaaatagtccggaaacatgtaaaggctgagtcc
gcaatccttgacggagaagccgttgcagtagacgaaaatggaaggccaaaagcctttcag
gagatccttaagcgtttccggcgcaagtacgatgttgaagaaaaaatgctcggaattcct
atccagctcaacctctttgacatcatgtacctgaacggcaaaaccctgattgattttcct
cttgttgagcggcgaaaagcgcttgagtcctgtgtggagagctcagttgagaactcaaaa
tccatttgcgtggacgagcaggtgataaccggagacctcgaggttgtggagaagatctac
agggaagccttaagagccgggcacgaaggcgtcatggtcaaaaatcctaactcgttatat
tcccccggcaagcggggtaaaaactggctgaagaaaaaaccccttatggaaacccttgac
cttgtggtcgtgggggcagaatggggttttgggcgcagggcaaacctgataggctcgtat
tcagttgcctgctatgaccccgaaacctctcgcttcatgcaggtcggcaaggttggtaca
gggcttactgatgagcagttaaaagaactcacagagatgctctccgggttaatggaagga
ggggaaaccggaggagtatttgccataagaccgaaagttgttctggaaattgcctttgag
gaaatccagaaaagccccaactacgactcaggctttgcactgcgttttccccgcttcatc
cgcatccgggacgataaagaccccgaagaagcagatacaatccagcgaatcaggcgcgtc
tacagccagcagctgaaaaggctttaa

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