Candidatus Moranella endobia PCIT: MEPCIT_171
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Entry
MEPCIT_171 CDS
T01562
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
men
Candidatus Moranella endobia PCIT
Pathway
men03030
DNA replication
men03410
Base excision repair
men03420
Nucleotide excision repair
men03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
men00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MEPCIT_171 (ligA)
03410 Base excision repair
MEPCIT_171 (ligA)
03420 Nucleotide excision repair
MEPCIT_171 (ligA)
03430 Mismatch repair
MEPCIT_171 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
men03032
]
MEPCIT_171 (ligA)
03400 DNA repair and recombination proteins [BR:
men03400
]
MEPCIT_171 (ligA)
Enzymes [BR:
men01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MEPCIT_171 (ligA)
DNA replication proteins [BR:
men03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MEPCIT_171 (ligA)
DNA repair and recombination proteins [BR:
men03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MEPCIT_171 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MEPCIT_171 (ligA)
MMR (mismatch excision repair)
DNA ligase
MEPCIT_171 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MEPCIT_171 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AEI74824
UniProt:
F7XXJ8
LinkDB
All DBs
Position
196031..198079
Genome browser
AA seq
682 aa
AA seq
DB search
MGVLDILEQIEQRIIRLREQLRHWEDLYYVDSLPIPTVPDSEYDRVMAELCTLEIKYPEL
LTPDSPSQRIGGKAMNHFGQVHHEIPMLSLDNSYEEKDFLAFDKRVRDRLKHDSAMTYCC
EIKLDGLAVSLLYENGYLVRAATRGDGTTGEDITVNVRTILTIPLRLTNHCNLPRLLEIR
GEVFMPEAIFQRLNATAKRTGSKVFTNPRNAAAGSLRQLDPAITARRSLMFYCYGVGLLE
DGTLPESHWEMLQLFKVWGIPVSNFILQCTGSLEVINFYKKVHDARSHLGFDIDGVVIKV
DSLLLQQRLGVITRAPRWAMAYKFPAQEQLTRVRDVEFQVGRTGVVTPVARLEPVMVAGV
RISNATLHNVNEVERLGLMIGDKVIIRRAGDVVPQIVGIIYSERPTDARPVVFPYYCPIC
SSNIESFEGKTVWRCTAGLICAAQRKEAMKHFVSRRAMYVKGMGDKIIAQLVERELVKTP
VDLFRLNQEMLTRLEHIGPKSAQNLLAALEQAKHTTLARFLYALGIREVGESTAANLAAA
YGTIEALTIANIDSLISLPNIGKIVATNVHNFFRDNHNLEVIEALLNPMIGIHWAEPVVT
SVAKVNNPFAGKNIVFTGSLNILSRDDAKDWLVAFGAKVSSHISYNTNLLIVGKAPGLKL
AQAQKQKIPIMYEAEMMRLIGK
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
gtgggggtattggacattttggaacaaatagaacaacgtatcatacggctccgtgagcag
ttacgacattgggaagatctatattacgttgactcgctccctatccctacagtgccagat
agcgaatatgaccgtgtcatggctgaactgtgtacgttagagatcaagtacccagaacta
ctgaccccagattcccctagccagcgtataggaggaaaggcaatgaaccacttcggacag
gtgcatcatgagatccctatgctatcgctggataatagttatgaagaaaaagatttttta
gcatttgataagcgagtacgcgatagactgaagcatgattctgctatgacatattgctgc
gaaataaaactagacggtctagcagtaagcctgctatatgaaaatggttatttagtgcgc
gccgccacccgtggggacggtaccaccggtgaggatatcaccgttaatgttcgcactata
ctaaccattccgctacgtttaacaaatcactgcaatttaccacgtctgcttgaaattcgc
ggcgaagtgttcatgccagaagcgatatttcagcggttgaatgcaacagctaagcgcaca
gggagtaaagtttttactaatccgcgtaacgccgcagctggctccttgcgtcagttagat
ccagccattaccgctaggcggtcgttgatgttttattgctacggcgttggcctgctagaa
gacggtacgttgccggaaagtcattgggaaatgctacaactatttaaagtatggggaata
ccagtgagcaattttattctccagtgcactggcagtttagaagtaatcaatttctataaa
aaagtgcatgatgccagatcacatctcggatttgatatcgatggggtggtaattaaagtt
gactcgctattactacaacaacgtttaggcgttatcacccgcgcgccacgctgggccatg
gcctataagtttccggcccaagagcaactaactagggtgcgggacgtggaatttcaggtt
gggcgcactggtgtggtgacgccggtagcacggcttgagccggtgatggtggctggcgta
agaattagcaatgcgacactgcacaatgtaaatgaagttgagcgtcttggtctgatgatt
ggcgataaggtgattatccgccgcgccggtgatgttgtaccccagattgtcggtattatc
tattctgaacgaccaacggatgcgcgaccagtagtttttccgtattattgtccaatttgc
agctcgaatatagagtcatttgagggtaaaacagtctggcgttgtaccgcgggtctaatt
tgtgcagcacaaagaaaggaagcgatgaagcatttcgtttcgcggcgggcaatgtatgta
aaaggcatgggggataagattatcgctcagctagtggaacgtgagctagtaaaaacacct
gttgatttgtttcggttaaatcaagagatgctgactagattagagcatattggaccgaaa
tctgcccaaaatttacttgcggcgctggaacaagcgaaacatactaccttagcacgtttt
ctatacgctctaggtatccgcgaggtaggagaatcaactgccgctaatttagcagcagct
tacggcacaatagaagcgcttaccatagccaatatagactctttaatcagcttaccaaac
ataggtaaaattgtggcgactaacgtgcataattttttcagggataaccataaccttgaa
gttatcgaagcattgttgaacccgatgataggcatccattgggctgaacctgttgttacc
tcagtagctaaggttaacaatccgttcgctggtaaaaatattgtttttaccggatcactg
aatattctttcgcgggatgatgccaaagattggttagtggcttttggtgctaaggttagt
agccatatctcttataatacaaatttgctgattgtgggaaaagcacccggattaaaactt
gctcaggcgcagaagcagaagattccaattatgtatgaagcggaaatgatgcgtctgata
ggtaaataa
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