Methylobacterium sp. 4-46: M446_6672
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Entry
M446_6672 CDS
T00679
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
met
Methylobacterium sp. 4-46
Pathway
met03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
met00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M446_6672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
met03019
]
M446_6672
03016 Transfer RNA biogenesis [BR:
met03016
]
M446_6672
Enzymes [BR:
met01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M446_6672
Messenger RNA biogenesis [BR:
met03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M446_6672
Transfer RNA biogenesis [BR:
met03016
]
Prokaryotic type
tRNA degradation factors
M446_6672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ACA20923
LinkDB
All DBs
Position
7344865..7347153
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AA seq
762 aa
AA seq
DB search
MAKRSSPPSDHAALPSREAVLAFIAEATTKVGKREIAKAFGLKGADKVELKRMLAELKDE
GAVEKDRAGLRKAGRLPPVLVAEIDARDRDGELLARPAQWDPEAGPAPKILVMAPRGRRT
GSLPAPGIGDRALLRVEPDREAPGRYLGRVVKVIGRNKAEMLGIYRALEKGGGRVLPVEK
RAQGREIEIPPGEEGEARDGDLVSVALTRDSRLGLPRGRVKERLGAVASEKAVSLIALHA
HGIPHVFPPAVLDEAARARPAGMEDREDWRDAPLLTIDPPDAKDHDDAVMALPDPDPANA
GGFVVTVAIADVAAYVRPGSALDREALLRGNSVYFPDRVVPMLPERISNDLCSLRPGEDR
PALAIRLVIGADGRKRRHSVHRVMMRSAAKLAYAQAQAAIDGQPDAVTQPLLDPVLRPLW
AAYRVLAAARDARGPLALDLPERKVVLDAEGRVDRVVVPERLEAHRLIEEFMIQANVAAA
ETLEEKAQALIYRVHDEPSLDKMRALGEVLASIGIKLPKEGVLRPSLFNRILGMVQGTEH
QTFLHEVILRAQAQAVYAPENAGHFGLALRRYAHFTSPIRRYADLVVHRALIRALRLGPD
GLPDMGAAELAEIGQQISNAERRAMAAERETIDRLIAQHLADRVGASFAGQISGVTKSGL
FVKLTETGADGFVPVSTLGADYFRYEEGRHALVGERSGETFRLGDRVTVRLVEAAPVAGA
LRFDVVSEGTRSSPAPRRGGPRKGRPAAERREGLTKRRGKRA
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
ttggccaaacgctcctccccgccctccgaccacgccgccctgccctcccgcgaggcggtg
ctggccttcatcgcggaggcgaccaccaaggtcggcaagcgcgagatcgccaaggccttc
ggcctcaagggcgccgacaaggtcgaactcaagcggatgctcgccgagctgaaggacgag
ggcgcggtcgagaaggaccgggcgggcctgcgcaaggccggccgcctgccgccggtcctc
gtcgccgaaatcgacgcccgcgaccgcgacggcgagctcctcgcccgccccgcccagtgg
gacccggaagccggcccggccccgaagatcctcgtgatggcgccgcgcggccggcggacc
ggcagcctgcccgcgcccgggatcggcgaccgggcgctcctgcgcgtcgagcccgaccgc
gaggcgccgggccgctatctcggccgcgtcgtcaaggtgatcggccgcaacaaggcggag
atgctcgggatctaccgcgccctggagaagggcggcgggcgcgtcctcccggtcgagaag
cgcgcccagggccgcgagatcgagatcccgcccggcgaggagggcgaggcccgcgacggc
gacctcgtcagcgtcgccctcacccgcgacagccgcctcggcctgccccgggggcgggtc
aaggagcgcctcggcgccgtcgcctccgagaaggccgtgagcctgatcgccctccacgcc
cacggcatcccgcacgtcttcccccccgcggtgctggacgaggccgcgcgggcgcggccg
gccgggatggaggaccgcgaggattggcgcgacgcccccctcctcaccatcgacccgccc
gacgccaaggaccacgacgacgccgtgatggcgctgcccgacccggaccccgccaacgcg
ggcggcttcgtggtcacggtcgcgatcgcggacgtcgccgcctatgtccggcccggcagc
gccctcgaccgcgaggcgctgctgcgcggcaactcggtctacttccccgaccgggtcgtg
ccgatgctgcccgagcgcatctcgaacgacctctgctccctgcgccccggcgaggaccgc
ccggccctcgccatccgcctcgtcatcggcgcggacggccgcaagaggcgccacagcgtc
caccgggtgatgatgcgctcggccgccaagctcgcctacgcgcaggcccaggccgcgatc
gacgggcagccggacgccgtcacgcagcccctcctcgaccccgtcctgcgcccgctctgg
gcggcctaccgggtgctcgccgcggcccgggacgcccgcggccccctcgccctcgacctg
cccgagcgcaaggtcgtcctcgacgccgagggtcgggtcgaccgggtggtggtgcccgag
cgcctggaggcgcaccgcctgatcgaggaattcatgatccaggcgaacgtcgccgccgcc
gagaccctggaggagaaggcgcaggccctgatctaccgggtccacgacgagccctcgctc
gacaagatgcgggcgctcggcgaggtgctggcctcgatcggcatcaagctgccgaaggag
ggcgtgctccggccctccctgttcaaccgcatcctcggcatggtccagggcaccgagcac
cagaccttcctgcacgaggtgatcctgcgcgcgcaggcccaggcggtctacgcgccggag
aatgccgggcatttcgggctcgccctgcgccgctacgcgcatttcacctcgccgatccgg
cgctacgccgacctcgtcgtccaccgcgccctgatccgggcgctgcggctcgggccggac
gggctgcccgacatgggcgcggccgagctcgccgagatcggccagcagatctccaacgcc
gagcgccgggccatggcggccgagcgcgagaccatcgaccggctcatcgcccagcacctc
gcggaccgggtcggcgccagcttcgcgggccagatctcgggcgtgaccaagtcggggctg
ttcgtgaagctcaccgagaccggggcggacggcttcgtgccggtctcgacgctcggggcc
gactatttccgctacgaggagggccgccacgccctggtgggcgagcgcagcggcgagacc
ttccggctcggcgaccgcgtcaccgtgcgcctggtcgaggccgcgcccgtggcgggcgcc
ctgcgcttcgacgtggtatcggaggggacgcggtcgagcccggcgccgcggcgcggcggc
ccgcgcaagggccgcccggcggccgagcgccgcgagggcctcaccaagcggagggggaag
cgggcgtga
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