Methanohalophilus halophilus: BHR79_09560
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Entry
BHR79_09560 CDS
T04572
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
mhaz
Methanohalophilus halophilus
Pathway
mhaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHR79_09560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhaz03019
]
BHR79_09560
Messenger RNA biogenesis [BR:
mhaz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
BHR79_09560
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
BHR79_09560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Cytomega_UL84
Motif
Other DBs
NCBI-ProteinID:
APH39704
UniProt:
A0A1L3Q496
LinkDB
All DBs
Position
complement(1881314..1882207)
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AA seq
297 aa
AA seq
DB search
MSDKPERFIDDEGLRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPREL
HPRRMQKPNEVLVRYKYNMASFSVEDRIRPGPSRRSTEISKVSGEAFEPVVMTQYYPGAV
IDVFAEVLQADAGTRTAAINAATLALADAGIPMKGLVSACAVGKVDGQLVLDLNKPEDNY
GQADLPVAMTQDGEITLLQMDGHLTPEELEEGLEMVKKGCQQILEIQREALVSRYGNEDE
EGEEAEEESPEEVPESEEDEEEEEERDDSFDNEESEAENADENDLTEEDEGEEDERQ
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaaccggaacgttttattgatgatgagggtctccgccttgatggaaggcgt
gttgatgagatccgacccatgaaagtagagatgggtgtgctttcaagagctgatggctca
tgttaccttgaatggggaaataataaggtgcttgcagcagtttatggtccccgtgaactg
cacccgagaaggatgcagaaacccaacgaagtacttgtgcgttacaagtataatatggcc
tctttttctgtggaagacaggataagaccgggtccaagcagaagaagtactgagatatcc
aaagtcagtggagaagcttttgaacctgttgtgatgacacaatattatcctggtgctgta
atagatgtattcgcagaagtattacaggccgatgcagggaccaggactgctgctatcaat
gcagcaacacttgctcttgcagatgctggcatacccatgaaagggcttgtttcagcctgt
gcagtcggtaaagttgatggtcagcttgttcttgatctcaacaaaccagaagataattat
ggtcaggctgatcttcctgtcgcaatgacccaggatggggaaataacccttctccagatg
gatggacaccttactcctgaagaactcgaagaaggcctggaaatggttaaaaaaggctgt
caacaaattcttgaaattcagcgtgaagcccttgtttccagatatgggaatgaggacgaa
gaaggcgaagaagctgaagaggaaagtccagaagaagtccctgaatcagaagaagacgaa
gaagaggaagaagaaagggatgactcattcgacaatgaagaatctgaagcagaaaacgcg
gatgaaaatgatttaaccgaagaggatgagggtgaagaagatgagcggcagtga
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