Microbacterium sp. CGR1: AKG07_03420
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Entry
AKG07_03420 CDS
T04046
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
mim
Microbacterium sp. CGR1
Pathway
mim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKG07_03420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mim03019
]
AKG07_03420
03009 Ribosome biogenesis [BR:
mim03009
]
AKG07_03420
Messenger RNA biogenesis [BR:
mim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AKG07_03420
Ribosome biogenesis [BR:
mim03009
]
Prokaryotic type
rRNA helicases
AKG07_03420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_22
AAA_19
HEM4
Motif
Other DBs
NCBI-ProteinID:
AKV85496
LinkDB
All DBs
Position
complement(732721..734565)
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AA seq
614 aa
AA seq
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MTPEDAVPTDAPETPGFEELGITGPVLKAIKDLGYETPSPIQAATIPTLLSGRDVVGMAQ
TGTGKTAAFALPVLERLDVSQKTPQALVLAPTRELALQVCEAFESYASKMKGVHVLPVYG
GQGYGVQLSALRRGVHVIVGTPGRIMDHLAKGTLDLSQLQYLVLDEADEMLKMGFAEDVE
QILAQTPEEKQVALFSATMPPQIRRLAQKYLREPEEISIKSKTATGTNITQRYLVVSYAQ
KVDALTRILEVENFDGMIVFVRTKNETETLAEKLRARGYSAAAINGDVPQVQRERSVNQL
KASKLDILVATDVAARGLDVERISHVINFDIPTDTESYVHRIGRTGRAGRTGDAISFITP
RERYLLKSIEKATRQQPTQMQLPSLDDVNTTRLARFDDAITTALSDSTRIEKFRDIIDHY
VRNHDVPEADVAAALAVVAQGDTPLLLDPADDALSKAVEYDNRPPRESNTRERRETREPR
ERRGRGDYKPYRIEVGRRHRVEPRQIVGALANEGGLGRDDFGAINIRPDFTVVELPANLD
SSVLEKLKDTRISGRLIEIKPDRGPGARRNDGPRDGARGGFERRDDRPRYDRDDRPARTD
ERGEKPFRKPRHKG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
gtgactcctgaagacgctgtgcccaccgacgcccccgagacccctggattcgaggagctc
ggcatcaccggccccgtcctcaaggccatcaaggacctcggctacgagaccccctccccc
atccaagccgccacgatcccgaccctgctctccggtcgcgatgtcgtcggtatggcgcag
accggaacgggaaagaccgcggcattcgcgctccccgtgctcgagcgcctcgacgtgtcc
cagaagaccccgcaagctctcgtgctcgctccgacccgcgagctcgctctgcaggtgtgc
gaggcgttcgagtcgtacgcgtcgaagatgaagggcgtccacgtcctccccgtctacggc
ggacagggctacggcgtgcagctgtcggcgctgcgccgcggcgtgcacgtgatcgtcggc
acccccggtcgcatcatggaccacctcgccaagggcaccctcgacctgtcccagctgcag
tacctggtgctcgatgaagccgacgagatgctcaagatgggcttcgccgaagacgtcgag
cagatcctcgcgcagacgcccgaggagaagcaggtagccctcttctcagcgaccatgccc
ccgcagatccgccgactcgcgcagaagtacctgcgtgagcccgaagagatcagcatcaag
tcgaagaccgccaccggtaccaacatcacgcagcggtacctcgtggtgtcgtacgcgcag
aaggtggatgcgctcactcgcatcctcgaggtcgagaacttcgacggcatgatcgtgttc
gtccgcaccaagaacgagaccgagacgctggccgagaagctgcgtgcccgcggatactcc
gccgccgccatcaacggcgacgtgccccaggtccagcgtgagcgcagcgtcaaccagctc
aaggcgagcaagctcgacatcctcgtcgcgaccgacgtggccgctcgcggtctcgacgtc
gagcgcatcagccacgtcatcaacttcgacatccccaccgacaccgagtcgtacgtgcac
cgcatcggccgcaccggccgcgcgggacgcaccggagacgcgatcagcttcatcaccccg
cgtgagcgctacctgctcaagtcgatcgagaaggccacgcgtcagcagcccactcagatg
cagctgcccagcctcgacgacgtgaacaccacgcgcctcgcccgcttcgacgacgcgatc
acgaccgcgctcagcgatagcacccgcatcgagaagttccgcgacatcatcgaccactac
gtgcgcaaccacgatgtgcccgaggccgatgtcgcagctgcgctcgctgtcgtcgcccag
ggcgatactcctctgctgctcgacccggccgacgacgccctgtcgaaagcggtcgagtac
gacaaccgtccgccgcgcgagagcaacactcgcgagcgtcgcgagacccgcgaaccgcgc
gagcgccgtgggcgcggcgactacaagccgtaccgcatcgaggtcggacgccgtcaccgc
gtcgagccccgtcagatcgtcggcgcactcgcgaatgagggcggcctgggtcgtgatgac
ttcggcgcgatcaacatccggccggacttcactgtcgtcgagttgccggcgaacctcgac
tcgtccgtcctggagaagctgaaggacacccgcatctcgggtcggctcatcgagatcaag
cccgaccgtgggcctggagcccgtcgtaacgacggccctcgtgacggcgcccgcggtggg
ttcgagcgccgcgatgaccgtccgcgctacgaccgtgacgaccgtcctgctcgcaccgat
gagcgaggcgagaagccgttccgcaagccccgacacaagggctga
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