KEGG   Mesorhizobium japonicum MAFF 303099: mll4606Help
Entry
mll4606           CDS       T00043                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mlo  Mesorhizobium japonicum MAFF 303099
Pathway
mlo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mlo00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    mll4606
Enzymes [BR:mlo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     mll4606
DNA repair and recombination proteins [BR:mlo03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     mll4606
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: BAB51222
RhizoBase: mll4606
UniProt: Q98DP8
LinkDB All DBs
Position
complement(3654504..3656993)
Genome map
AA seq 829 aa AA seqDB search
MAGLEQYHTKRDFKKTSEPAGKVARTGKNEAGGIFVIHKHAATRLHYDLRLEHDGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWMPETDPAKA
MKKGHISFELNGHKLHGLWHLVRLKPRAGEKRDNWLLIKSDDAAARPGEDILKERPESVK
SGLTIEEVGEGKAAKGRKPEVWHSNKPAAGKAKAAARKLDFIEPQLATLERDAPPGKDWL
HEVKFDGYRMQAHIAGTDVRLLTRTGLDWTEKFGGEIIAELAGLKCSDAIIDGEIVVLAD
SGVSSFALLQQDLSAKRANRFLYYVFDLMRLDGKDLRAEPLVERKQALQELLGKQAENPA
VRFSDHFFEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYL
PSDKTGRGLRSLLVGYYEGGKLQYAGRVGTGFSVKGATELKTRLDALQAKASPFDKAVPK
GKGLVWVKPELVGEVEFRSWTSDRIVRHASFQGLREDKPAEDVVQEKPKAATGKAKPASS
GAGTMTTSVKLSHPDKLLWPDEKISKQGLLDHYAEVWPRMEQFVVNRPLSLVRAPDGIGG
PRFFQKHASAGMSDRIARMKDPTDGEEILFVRDFDGVAALVQYGVVEIHIWGCTIDKLEQ
PDQIIFDLDPDEGVDVKAVREAALDIRGKLDELSLPNFVKTSGGKGYHVLVPLKPSADWE
AVKTFAHDFAKALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYSSRAKKGAT
VSMPVTWAEIEAGLAPNAFPIGDKTTLAKLAEADPWMDFFKQGKVLKRG
NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt
atggccggcctcgaacagtatcataccaagcgcgatttcaagaagacatcggagccggcg
ggcaaggtcgcacgcaccgggaaaaacgaagccgggggcatcttcgtcatccacaagcac
gcggcgaccaggctgcactacgaccttcggctcgagcatgacggcgtgctgtggagctgg
gcggtgacgcgggggcccagcctcgatccgcacgagaagcggctggccgtccatgtcgag
gaccacccgatcgactatgcgccgttcgaaggcacgatcccgaagggcgagtatggcggc
ggctcggtcatcgtctgggacgaggggacatggatgcctgagaccgacccggccaaggcg
atgaagaagggccacatcagtttcgagctcaacggccacaaattgcatgggctgtggcat
ctggtgcggctgaagccgcgggcgggcgaaaagcgcgacaactggctcttgatcaagtcc
gacgatgccgcggcgcgcccgggcgaggacattttgaaggagaggccggaatcggtgaag
tcgggcctgacgatcgaagaggtcggcgagggcaaggcggccaagggccgaaagcccgag
gtctggcattcgaacaagccggccgccggcaaggcgaaggccgcggcgcgcaaactcgac
ttcatcgaaccgcagctggcgacgctggagcgggatgcaccgccgggcaaggactggctg
catgaagtcaaattcgacggctatcgcatgcaggcgcatatcgccggcacggatgtgcgg
ctcttgacccgcaccggcctcgactggacggaaaaattcggcggcgagatcattgccgag
ctcgccgggctgaagtgcagcgacgccatcatcgacggcgagattgtcgtgctggccgac
agcggcgtctcgtccttcgcgctgctgcagcaggatttgtcggcgaagcgggcaaaccgc
ttcctctattacgtgttcgacctgatgcgtctcgacggcaaggatttgcgcgccgagccg
ctggtcgagcgcaagcaggccttgcaggagctgctcggcaagcaggccgagaacccggcg
gtgcgtttctccgaccattttttcgagcccggcaagatcatgctggagcatgcctgcagg
atggggctggaaggcgtcgtgtccaaacgcgccgatgcgccctatcgcagcgggcgcggc
ccgacctgggtgaagtcgaaatgcacggcacggcaagaattcgtcatcggcggctatctg
ccgtccgacaagaccgggcgcgggctgcggtcgctgctggtcggctactacgagggcggc
aaactgcagtacgccggtcgtgtcggcaccggtttctccgtcaagggcgcgacggagctg
aagaccaggctcgacgcgctgcaggcgaaggcttcgcccttcgacaaggccgtgccgaaa
ggcaagggcctggtctgggtcaagccggaattggtcggcgaagtggagtttcgcagctgg
acgtcggaccgtatagtgcgtcatgcctcgttccaggggctgcgcgaggacaagccggcg
gaggacgttgtgcaggaaaagcccaaggcagcgacaggcaaggccaagccggcctcgagc
ggcgccgggacgatgacgaccagcgtaaaactctcgcatcccgacaagctgctctggccc
gacgaaaagatctccaagcagggcctgctcgaccattacgccgaggtctggccccgcatg
gagcagttcgtcgtcaaccggccgctcagcctggtgcgggcgccggacggcatcggcggc
ccgcgcttcttccagaaacatgcctcggccggcatgagcgacagaatagcccggatgaag
gacccaacggatggcgaggagatcctgttcgtgcgggatttcgacggtgtggcggcactc
gtccagtatggcgtggtcgagatccacatctggggctgcacgatcgacaagcttgaacag
ccggaccagatcatcttcgatctcgatcccgatgaaggcgtcgacgtcaaagcggtgcgc
gaggcggcgctcgatataagggggaagctcgacgagctgtcgctgccgaacttcgtcaag
acatcgggcggcaagggctatcatgtgctggtgccgctgaaaccgtcggcggattgggag
gcggtgaagaccttcgcgcatgatttcgccaaggcgctcgagcagggtgcccccgaccgc
tacacggcgacgctgtcgaagaaggcgcggaccgggaaaatcttcgtcgactatctgcgc
aatggccgcggctcgacgacggtcgcgccctattcctcgcgcgccaagaaaggggccacc
gtgtcgatgccggtgacctgggccgagatcgaggccggcctggcgccgaatgctttccct
ataggcgacaagacgacgcttgcgaagttggcggaagccgacccgtggatggatttcttc
aagcagggcaaggtgttgaagcgggggtag

DBGET integrated database retrieval system