KEGG   Mycobacterium tuberculosis variant microti: RN08_1452
Entry
RN08_1452         CDS       T04291                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
mmic  Mycobacterium tuberculosis variant microti
Pathway
mmic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RN08_1452
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmic03021]
    RN08_1452
   03019 Messenger RNA biogenesis [BR:mmic03019]
    RN08_1452
Transcription machinery [BR:mmic03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RN08_1452
Messenger RNA biogenesis [BR:mmic03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RN08_1452
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA AAA_25 NACHT AAA_22 VWA_2 CoV_NSP2_C HNF-1_N PIP5K
Other DBs
NCBI-ProteinID: AMC58879
LinkDB
Position
1460857..1462665
AA seq 602 aa
MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM
RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV
RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ
QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR
TSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG
SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT
TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL
AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR
NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT
RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD
SD
NT seq 1809 nt   +upstreamnt  +downstreamnt
gtgaccgatacggacctcattacggctggcgaaagtaccgacggcaagccgtcggatgcc
gctgccacagatcccccagacctcaacgccgacgagccggccggctcgctggccaccatg
gtgctgcccgaactgcgtgcgctggctaatcgagccggcgtgaagggaacatcgggtatg
cggaagaacgaactgatcgctgcgattgaggagatcaggcgacaggccaacggcgcccca
gccgttgaccggtcggctcaagagcacgacaagggcgaccggccgcccagttccgaggca
ccggccacccagggggaacagaccccgaccgaacagatcgattcccaaagccaacaggtc
cgcccggagcggcgcagcgccacccgtgaagcgggaccctccggctccggtgagcgtgcg
ggcacagccgcagacgacaccgacaaccgccaaggcggtcaacaggacgccaagaccgag
gagcgtggcaccgacgcgggtggcgaccaagggggtgaccagcaggcttcgggcggtcag
caggcgcgcggcgacgaggacggagaagcgcgtcagggccggcgcggacgccggttccgc
gatcggcggcgccgcggtgaacgatccggcgacggcgccgaggctgaactgcgtgaggac
gacgtcgtccagccggtagccggcatactcgacgtcctggacaactacgcgtttgtgcgc
acctccggctacctacccggtccgcacgacgtgtatgtgtcgatgaacatggtgcgcaag
aacggcatgcgccgtggtgatgcggtgaccggtgcggtgcgggtgcccaaggaaggggag
caacccaaccagcggcagaagttcaacccgctggtccgcctggacagcatcaacggcgga
tcggtcgaagacgccaagaagcggcccgagttcggcaaactgacgccgttgtaccccaac
cagcggcttcgtctggaaaccagtaccgagcggctgaccacccgggtcatcgacctcatc
atgccgatcggcaagggtcaacgcgcgttgattgtgtcgccgcccaaagcgggcaagaca
acgatcctgcaggacatcgccaacgcgatcaccaggaacaacccggaatgccacctcatg
gtcgtgctcgtcgacgagcggcctgaggaggtcaccgatatgcagcgctcggtcaaaggc
gaggtcatcgcttcaactttcgaccggccgccgtcggaccacacgtcggtcgccgagctg
gcgatcgaacgcgccaagcggctggtggagcaaggcaaggacgtcgtggtgctgctcgat
tcaatcacccggctaggccgcgcttacaacaacgcgtcgccggcgtcgggccggatcctg
tccggtggtgtcgattccacggcgttgtacccgcccaagcgcttcctgggggccgcgcgc
aacatcgaagagggcgggtcgctgaccatcatcgccactgcgatggtcgagaccgggtcc
actggtgacacggtcattttcgaggagttcaagggcaccggcaacgccgagctcaagctg
gaccgcaagatcgccgagcggcgggttttccctgcggtcgacgtgaatccttctggaacc
cgcaaggacgagctactgctgtcgcccgacgagttcgctattgtgcacaagctgcgccgc
gtgctatcgggcctggattcccaccaggccatcgacctgctgatgtcgcagctgcgtaag
acgaagaacaactacgaattccttgttcaggtgtccaagaccacgccagggtccatggac
agcgactga

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