Methylomonas methanica: Metme_3822
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Entry
Metme_3822 CDS
T01511
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmt
Methylomonas methanica
Pathway
mmt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Metme_3822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmt03021
]
Metme_3822
03400 DNA repair and recombination proteins [BR:
mmt03400
]
Metme_3822
Enzymes [BR:
mmt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Metme_3822
Transcription machinery [BR:
mmt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Metme_3822
DNA repair and recombination proteins [BR:
mmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Metme_3822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AEG02177
UniProt:
F9ZXM2
LinkDB
All DBs
Position
complement(4231687..4235910)
Genome browser
AA seq
1407 aa
AA seq
DB search
MNFLKRQGRTDDFDTIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAKIFGP
ISDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRI
ALLLDMTLRSIERVLYFETFVVTDPGMSPLERGQLLTDEEYLNAVEEHGDDFVAKMGAEA
VFDLLKSIDLKEEINTLREEINSTSSDTKIKKFSKRLKVIDSLLASNNRPEWMIMQVLPV
LPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLTRLLDLNAPDIIVRNEKRMLQEAVD
ALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLRLH
QCGLPKKMALELFKPFIFSKLQLRGLATTIKAAKKMVEREGAEVWDILEEVIREHPVLLN
RAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHIPLSIEAQLEARTLM
MATNNILSPANGEPVINPSQDVVLGLYYISREKINARGEGSIFTDSAEMMKALDSKAVEL
QSKIEIRVTEKIKNAAGEFEAITSRKKTTVGRAIIWDIVPDGMPYELVNVDMTKKNISRL
INYSYRYLGIKETVILADQIMYLGFRYATRSGVSFGIEDMEIPAKKADIIRSAGAEVNEI
QNQYSSGLVTDGERYNKVVDIWSRANDQVAKVMMEGLGEDLVLDESGAVLKDANGKSVTQ
KSFNSIFMMAESGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFIST
HGARKGLADTALKTANSGYLTRRLVDVAQDLVIAETDCGTENGLTMMPIIEGGDVVEPLV
ERVLGRVAAIDVTEQASDKVLIPAGTMIDENLVSVLEENGIDKMLVRSVITCESRQGVCA
KCYGRDLGRGHLVNIGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRSAAVSNVQVKSVG
SVKLNNMKTVKNRENNLVAVSRSGEVGVMDDYGRERERYKIPYGAVLSIEDGSAVKAGDI
IVNWDPHTHPVITEVDGFIQLHDFIDGVTVQEQSDEVTGLTSRVVTDPKQRSSAGKELRP
MVRLIDEHGGLINLPGTDIPAQYFLPAGAIVGVKDGGEVRVGDVLARIPQESSKTRDITG
GLPRVADLFEARKTKDPAILAEATGMVSFGKETKGKQRVIITDAEGEQYETLIPKWRHIT
VFEGEFVEKGETIAEGELTPHDILRLRGIEELADYLVKEIQDVYRLQGVKINDKHIEAII
RQMLRKVEITASGETDFVKGEQVERSLMNAVNDQAEREGKIPASYESMLLGITKASLATE
SFISAASFQETTRVLTDAAVRGISDSLNGLKENVIVGRLIPAGTGLAYHEQRRKRRSIEA
SNESDSAISAVEAVDVEEALKQALNIE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcttaaagcgtcagggtcgcaccgatgattttgacactatccggattggcttg
gcttcgccggacatgattcgttcatggtcttacggcgaggtcaaaaagcccgagaccatc
aactaccgtacgttcaagccggaaagagacggcttgttttgcgccaaaatttttggaccg
attagcgattacgagtgcttgtgcggaaaatataagcgcttaaagcatagaggcgtcatt
tgtgaaaagtgcggcgtcgaagtcaccctatccaaggttcgccgggaaagaatgggccat
atcgaactggcgagtccggttgcgcacatatggtttttgaaatcgctgccgtccaggatc
gcgctgttattggatatgacgctacgttctatcgagcgtgtgctgtatttcgaaacattc
gtggttaccgatcccggtatgtcgcctttggaaagagggcaattgctgacggacgaagag
tatctgaacgcggttgaagaacatggtgacgatttcgtggccaaaatgggtgccgaagca
gtcttcgatttgttgaagtcgatagatctgaaagaagaaatcaatacactgcgggaagaa
atcaattcgaccagctccgataccaagattaaaaagttttccaagcgcctgaaagttatt
gattcgctgttagcgtccaataaccgtccggaatggatgattatgcaggtgctaccagta
ctgccgcccgagttgcgccctctggtaccgctggatggtggccgttttgccacgtccgat
ctgaacgatttatatcgccgagtcattaacagaaacaatcgtctgaccagactgttggat
ctgaatgcgccggacattatcgtccgcaacgaaaagcgcatgctgcaggaagctgtcgat
gcgttgttggataatggccgtcgcggtcgtgcaattaccggcagcaatagacgccctctg
aaatccttggctgatatgatcaagggtaagcaaggccgtttccgtcaaaatctattaggc
aagcgggtcgattattcgggccgttcggtcatcgttgtggggccgacattaaggcttcat
caatgcggattgccgaaaaaaatggcgttggaattgtttaagcctttcatattcagcaag
ttgcagttgcgcggtctggcaaccaccattaaagccgccaaaaaaatggtagagcgtgaa
ggtgcggaagtttgggatattctggaagaagtgattcgtgagcatcctgtattgctgaac
cgcgcccctactctgcatagattgggtattcaggcgtttgagccgaccttgatcgaaggc
aaagccattcagttgcatcctttggtctgtagcgcgtttaacgcggatttcgacggtgac
cagatggctgtgcatattccgttgtccattgaggcacaactggaagcgcgtacgctgatg
atggcgaccaacaatatattgtcacccgccaacggcgagcctgttatcaatccttcccaa
gacgtcgtcttggggttgtactacatcagccgggaaaaaattaacgccagaggcgaaggc
agcatctttaccgattccgccgagatgatgaaagcgttggacagtaaagccgttgagctg
cagagcaaaattgaaattcgcgttaccgaaaaaattaaaaatgccgccggtgaatttgaa
gcgattaccagtagaaagaaaaccacggttggcagagcgataatctgggatatcgtgcct
gacggcatgccttatgaattggtcaatgtagacatgaccaagaagaatatttccaggctg
atcaactatagctaccgctatttgggtattaaggaaaccgtgattttagcggaccaaatc
atgtatttggggttccgctatgcaacacgttccggtgtctcttttggtatagaggatatg
gaaatccctgctaaaaaggcggacatcattcgttcggcgggagccgaggttaacgaaatc
cagaatcaatattcctccggcttggtaacggatggcgaacgctacaacaaggttgtcgac
atttggtcgcgggcgaatgatcaagtggccaaggtgatgatggagggtttgggggaagac
ttggttctggatgagagcggagctgttttgaaggacgccaacggcaaatccgtaacccaa
aaatcatttaactctatctttatgatggctgagtctggggcgcggggttctgctgcccag
attaggcagttggcgggtatgaggggtttgatggccaagccggacggttccatcatcgaa
acgcctattaccgcgaatttccgggaaggactggacgtactgcaatattttatttccacg
cacggtgctcggaaaggtttggctgatactgcgcttaaaaccgcaaactcaggctatctg
acgcgacgtttggtggacgtggcgcaagacttggtgattgccgagaccgattgcggcact
gaaaacggtttgaccatgatgcccatcatcgagggtggtgacgttgtcgagccgttggtt
gagcgggtgttgggccgcgttgcggctatagatgtgactgaacaggctagtgataaagtt
ttgattccggccggaaccatgattgatgaaaacttggtgtcggtgttggaagagaacggt
atcgataaaatgcttgtgcgctccgtgattacatgtgagtcacggcaaggggtctgtgcc
aaatgttatggccgtgacttagggcgtggccatttagtcaatatcggcgaggcggttggt
gtggttgcggcgcaatccatcggtgagcctggtactcagcttaccatgcgtactttccat
attggtggtgctgcatccaggtcggcggctgtcagtaacgtgcaagttaaatccgtgggt
tcggtcaagctgaacaatatgaagaccgttaaaaaccgggaaaataatttggtcgctgtt
tctcggtcgggcgaagtcggcgttatggatgattacggacgcgaaagagagcgttataaa
attccttacggggctgtgttgtcgatcgaagacggtagtgcggttaaagccggtgatatc
atcgttaattgggacccgcatacacatccggtcatcaccgaggtggatggttttatacag
ttacacgactttattgacggtgtgacggtacaagagcagtcggacgaagtaaccggtctg
acatcgcgagttgttaccgatcccaagcaaagaagttccgctggtaaagaattacggccc
atggtgcgattgattgatgaacacggcgggttgatcaatctgcctggcactgatattcca
gcgcaatactttttgccggctggtgctatcgtcggggtgaaagacggcggcgaggtaagg
gtcggtgacgttttggccaggattccccaagagtccagtaaaacgcgcgatatcaccggt
ggtttaccgcgtgttgccgacttgtttgaggcgcgtaaaaccaaagaccctgcgattttg
gctgaggccacaggtatggtttcattcggtaaagagaccaaaggtaagcaaagggtcatc
attaccgatgctgaaggtgagcaatatgaaaccctgattccaaaatggcgtcatatcacc
gtgtttgaaggtgagtttgtcgagaaaggtgaaacaattgccgaaggtgaattgactccg
cacgatatattgcggctcagaggtatcgaagagttggccgattatctggtcaaggaaatt
caggatgtttaccgactgcaaggggtgaagatcaacgataaacacatcgaagcgataatt
cgtcagatgttgcgaaaagttgagatcacagcgtcgggcgaaactgactttgtcaagggt
gagcaagttgagcgcagtttgatgaatgcggtcaacgatcaagccgagagagagggcaaa
attccggccagctatgaatcgatgctgttaggtattaccaaagcgtcgttagctaccgag
tcctttatttcggcggcgtcattccaagagacaacccgtgttcttaccgatgccgccgtt
agaggtatcagcgatagtttgaatgggttgaaggaaaacgttatcgtcggtaggttgatt
ccggctggtactggattggcttaccacgagcaacggcgcaaaagacgatcgatcgaagcg
tcaaatgaaagcgactcggcaatcagtgcggtagaggcggtcgatgtagaagaagcctta
aagcaggctttaaatattgagtaa
DBGET
integrated database retrieval system