KEGG   Methylomonas methanica: Metme_3822
Entry
Metme_3822        CDS       T01511                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
mmt  Methylomonas methanica
Pathway
mmt03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mmt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Metme_3822
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmt03021]
    Metme_3822
   03400 DNA repair and recombination proteins [BR:mmt03400]
    Metme_3822
Enzymes [BR:mmt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Metme_3822
Transcription machinery [BR:mmt03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Metme_3822
DNA repair and recombination proteins [BR:mmt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Metme_3822
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23 Biotin_lipoyl_2 Apocytochr_F_C ApbA_C
Other DBs
NCBI-ProteinID: AEG02177
UniProt: F9ZXM2
LinkDB
Position
complement(4231687..4235910)
AA seq 1407 aa
MNFLKRQGRTDDFDTIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAKIFGP
ISDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRI
ALLLDMTLRSIERVLYFETFVVTDPGMSPLERGQLLTDEEYLNAVEEHGDDFVAKMGAEA
VFDLLKSIDLKEEINTLREEINSTSSDTKIKKFSKRLKVIDSLLASNNRPEWMIMQVLPV
LPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLTRLLDLNAPDIIVRNEKRMLQEAVD
ALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLRLH
QCGLPKKMALELFKPFIFSKLQLRGLATTIKAAKKMVEREGAEVWDILEEVIREHPVLLN
RAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHIPLSIEAQLEARTLM
MATNNILSPANGEPVINPSQDVVLGLYYISREKINARGEGSIFTDSAEMMKALDSKAVEL
QSKIEIRVTEKIKNAAGEFEAITSRKKTTVGRAIIWDIVPDGMPYELVNVDMTKKNISRL
INYSYRYLGIKETVILADQIMYLGFRYATRSGVSFGIEDMEIPAKKADIIRSAGAEVNEI
QNQYSSGLVTDGERYNKVVDIWSRANDQVAKVMMEGLGEDLVLDESGAVLKDANGKSVTQ
KSFNSIFMMAESGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFIST
HGARKGLADTALKTANSGYLTRRLVDVAQDLVIAETDCGTENGLTMMPIIEGGDVVEPLV
ERVLGRVAAIDVTEQASDKVLIPAGTMIDENLVSVLEENGIDKMLVRSVITCESRQGVCA
KCYGRDLGRGHLVNIGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRSAAVSNVQVKSVG
SVKLNNMKTVKNRENNLVAVSRSGEVGVMDDYGRERERYKIPYGAVLSIEDGSAVKAGDI
IVNWDPHTHPVITEVDGFIQLHDFIDGVTVQEQSDEVTGLTSRVVTDPKQRSSAGKELRP
MVRLIDEHGGLINLPGTDIPAQYFLPAGAIVGVKDGGEVRVGDVLARIPQESSKTRDITG
GLPRVADLFEARKTKDPAILAEATGMVSFGKETKGKQRVIITDAEGEQYETLIPKWRHIT
VFEGEFVEKGETIAEGELTPHDILRLRGIEELADYLVKEIQDVYRLQGVKINDKHIEAII
RQMLRKVEITASGETDFVKGEQVERSLMNAVNDQAEREGKIPASYESMLLGITKASLATE
SFISAASFQETTRVLTDAAVRGISDSLNGLKENVIVGRLIPAGTGLAYHEQRRKRRSIEA
SNESDSAISAVEAVDVEEALKQALNIE
NT seq 4224 nt   +upstreamnt  +downstreamnt
atgaatttcttaaagcgtcagggtcgcaccgatgattttgacactatccggattggcttg
gcttcgccggacatgattcgttcatggtcttacggcgaggtcaaaaagcccgagaccatc
aactaccgtacgttcaagccggaaagagacggcttgttttgcgccaaaatttttggaccg
attagcgattacgagtgcttgtgcggaaaatataagcgcttaaagcatagaggcgtcatt
tgtgaaaagtgcggcgtcgaagtcaccctatccaaggttcgccgggaaagaatgggccat
atcgaactggcgagtccggttgcgcacatatggtttttgaaatcgctgccgtccaggatc
gcgctgttattggatatgacgctacgttctatcgagcgtgtgctgtatttcgaaacattc
gtggttaccgatcccggtatgtcgcctttggaaagagggcaattgctgacggacgaagag
tatctgaacgcggttgaagaacatggtgacgatttcgtggccaaaatgggtgccgaagca
gtcttcgatttgttgaagtcgatagatctgaaagaagaaatcaatacactgcgggaagaa
atcaattcgaccagctccgataccaagattaaaaagttttccaagcgcctgaaagttatt
gattcgctgttagcgtccaataaccgtccggaatggatgattatgcaggtgctaccagta
ctgccgcccgagttgcgccctctggtaccgctggatggtggccgttttgccacgtccgat
ctgaacgatttatatcgccgagtcattaacagaaacaatcgtctgaccagactgttggat
ctgaatgcgccggacattatcgtccgcaacgaaaagcgcatgctgcaggaagctgtcgat
gcgttgttggataatggccgtcgcggtcgtgcaattaccggcagcaatagacgccctctg
aaatccttggctgatatgatcaagggtaagcaaggccgtttccgtcaaaatctattaggc
aagcgggtcgattattcgggccgttcggtcatcgttgtggggccgacattaaggcttcat
caatgcggattgccgaaaaaaatggcgttggaattgtttaagcctttcatattcagcaag
ttgcagttgcgcggtctggcaaccaccattaaagccgccaaaaaaatggtagagcgtgaa
ggtgcggaagtttgggatattctggaagaagtgattcgtgagcatcctgtattgctgaac
cgcgcccctactctgcatagattgggtattcaggcgtttgagccgaccttgatcgaaggc
aaagccattcagttgcatcctttggtctgtagcgcgtttaacgcggatttcgacggtgac
cagatggctgtgcatattccgttgtccattgaggcacaactggaagcgcgtacgctgatg
atggcgaccaacaatatattgtcacccgccaacggcgagcctgttatcaatccttcccaa
gacgtcgtcttggggttgtactacatcagccgggaaaaaattaacgccagaggcgaaggc
agcatctttaccgattccgccgagatgatgaaagcgttggacagtaaagccgttgagctg
cagagcaaaattgaaattcgcgttaccgaaaaaattaaaaatgccgccggtgaatttgaa
gcgattaccagtagaaagaaaaccacggttggcagagcgataatctgggatatcgtgcct
gacggcatgccttatgaattggtcaatgtagacatgaccaagaagaatatttccaggctg
atcaactatagctaccgctatttgggtattaaggaaaccgtgattttagcggaccaaatc
atgtatttggggttccgctatgcaacacgttccggtgtctcttttggtatagaggatatg
gaaatccctgctaaaaaggcggacatcattcgttcggcgggagccgaggttaacgaaatc
cagaatcaatattcctccggcttggtaacggatggcgaacgctacaacaaggttgtcgac
atttggtcgcgggcgaatgatcaagtggccaaggtgatgatggagggtttgggggaagac
ttggttctggatgagagcggagctgttttgaaggacgccaacggcaaatccgtaacccaa
aaatcatttaactctatctttatgatggctgagtctggggcgcggggttctgctgcccag
attaggcagttggcgggtatgaggggtttgatggccaagccggacggttccatcatcgaa
acgcctattaccgcgaatttccgggaaggactggacgtactgcaatattttatttccacg
cacggtgctcggaaaggtttggctgatactgcgcttaaaaccgcaaactcaggctatctg
acgcgacgtttggtggacgtggcgcaagacttggtgattgccgagaccgattgcggcact
gaaaacggtttgaccatgatgcccatcatcgagggtggtgacgttgtcgagccgttggtt
gagcgggtgttgggccgcgttgcggctatagatgtgactgaacaggctagtgataaagtt
ttgattccggccggaaccatgattgatgaaaacttggtgtcggtgttggaagagaacggt
atcgataaaatgcttgtgcgctccgtgattacatgtgagtcacggcaaggggtctgtgcc
aaatgttatggccgtgacttagggcgtggccatttagtcaatatcggcgaggcggttggt
gtggttgcggcgcaatccatcggtgagcctggtactcagcttaccatgcgtactttccat
attggtggtgctgcatccaggtcggcggctgtcagtaacgtgcaagttaaatccgtgggt
tcggtcaagctgaacaatatgaagaccgttaaaaaccgggaaaataatttggtcgctgtt
tctcggtcgggcgaagtcggcgttatggatgattacggacgcgaaagagagcgttataaa
attccttacggggctgtgttgtcgatcgaagacggtagtgcggttaaagccggtgatatc
atcgttaattgggacccgcatacacatccggtcatcaccgaggtggatggttttatacag
ttacacgactttattgacggtgtgacggtacaagagcagtcggacgaagtaaccggtctg
acatcgcgagttgttaccgatcccaagcaaagaagttccgctggtaaagaattacggccc
atggtgcgattgattgatgaacacggcgggttgatcaatctgcctggcactgatattcca
gcgcaatactttttgccggctggtgctatcgtcggggtgaaagacggcggcgaggtaagg
gtcggtgacgttttggccaggattccccaagagtccagtaaaacgcgcgatatcaccggt
ggtttaccgcgtgttgccgacttgtttgaggcgcgtaaaaccaaagaccctgcgattttg
gctgaggccacaggtatggtttcattcggtaaagagaccaaaggtaagcaaagggtcatc
attaccgatgctgaaggtgagcaatatgaaaccctgattccaaaatggcgtcatatcacc
gtgtttgaaggtgagtttgtcgagaaaggtgaaacaattgccgaaggtgaattgactccg
cacgatatattgcggctcagaggtatcgaagagttggccgattatctggtcaaggaaatt
caggatgtttaccgactgcaaggggtgaagatcaacgataaacacatcgaagcgataatt
cgtcagatgttgcgaaaagttgagatcacagcgtcgggcgaaactgactttgtcaagggt
gagcaagttgagcgcagtttgatgaatgcggtcaacgatcaagccgagagagagggcaaa
attccggccagctatgaatcgatgctgttaggtattaccaaagcgtcgttagctaccgag
tcctttatttcggcggcgtcattccaagagacaacccgtgttcttaccgatgccgccgtt
agaggtatcagcgatagtttgaatgggttgaaggaaaacgttatcgtcggtaggttgatt
ccggctggtactggattggcttaccacgagcaacggcgcaaaagacgatcgatcgaagcg
tcaaatgaaagcgactcggcaatcagtgcggtagaggcggtcgatgtagaagaagcctta
aagcaggctttaaatattgagtaa

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