Mus musculus (house mouse): 230073
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Entry
230073 CDS
T01002
Symbol
Rigi, 6430573D20Rik, C330021E21, Ddx58, RIG-I, RLR-1
Name
(RefSeq) RNA sensor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu04064
NF-kappa B signaling pathway
mmu04622
RIG-I-like receptor signaling pathway
mmu04623
Cytosolic DNA-sensing pathway
mmu05160
Hepatitis C
mmu05161
Hepatitis B
mmu05162
Measles
mmu05164
Influenza A
mmu05168
Herpes simplex virus 1 infection
mmu05169
Epstein-Barr virus infection
mmu05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
230073 (Rigi)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
230073 (Rigi)
04623 Cytosolic DNA-sensing pathway
230073 (Rigi)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
230073 (Rigi)
05160 Hepatitis C
230073 (Rigi)
05171 Coronavirus disease - COVID-19
230073 (Rigi)
05164 Influenza A
230073 (Rigi)
05162 Measles
230073 (Rigi)
05168 Herpes simplex virus 1 infection
230073 (Rigi)
05169 Epstein-Barr virus infection
230073 (Rigi)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mmu04054
]
230073 (Rigi)
Enzymes [BR:
mmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
230073 (Rigi)
Pattern recognition receptors [BR:
mmu04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
230073 (Rigi)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_25
ApoLp-III
Motif
Other DBs
NCBI-GeneID:
230073
NCBI-ProteinID:
NP_766277
MGI:
2442858
Ensembl:
ENSMUSG00000040296
UniProt:
Q6Q899
A1L0V6
Structure
PDB
LinkDB
All DBs
Position
4:complement(40203775..40239843)
Genome browser
AA seq
926 aa
AA seq
DB search
MTAEQRQNLQAFRDYIKKILDPTYILSYMSSWLEDEEVQYIQAEKNNKGPMEAASLFLQY
LLKLQSEGWFQAFLDALYHAGYCGLCEAIESWDFQKIEKLEEHRLLLRRLEPEFKATVDP
NDILSELSECLINQECEEIRQIRDTKGRMAGAEKMAECLIRSDKENWPKVLQLALEKDNS
KFSELWIVDKGFKRAESKADEDDGAEASSIQIFIQEEPECQNLSQNPGPPSEASSNNLHS
PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ
IPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA
IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKT
AEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM
KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALF
LYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEK
VSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPG
ILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG
NVIKMIQTRGRGRARDSKCFLLTSSADVIEKEKANMIKEKIMNESILRLQTWDEMKFGKT
VHRIQVNEKLLRDSQHKPQPVPDKENKKLLCGKCKNFACYTADIRVVETSHYTVLGDAFK
ERFVCKPHPKPKIYDNFEKKAKIFCAKQNCSHDWGIFVRYKTFEIPVIKIESFVVEDIVS
GVQNRHSKWKDFHFERIQFDPAEMSV
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgacagcggagcagcggcagaatctgcaagcattcagagactatatcaagaagattctg
gaccccacctacatcctcagctacatgagttcctggctcgaggatgaggaggtgcagtac
attcaggctgagaagaacaacaagggcccaatggaagctgcctcactcttcctccagtac
ctgttgaagctgcagtcagagggctggttccaggcctttttggatgccctgtaccatgca
ggttactgtggactttgtgaagccatcgaaagttgggactttcaaaaaattgaaaagtta
gaggaacacagattacttttaagacgtttagaaccagaatttaaggccacagttgatcca
aatgatatcctttctgaactatccgaatgtttgattaatcaggaatgtgaagaaatcaga
cagatccgagacactaaagggagaatggcaggtgcggagaagatggccgaatgtcttatc
agatccgacaaggaaaactggccaaaggtcttgcaacttgctttggagaaagacaacagc
aagtttagtgaattgtggattgttgataaaggtttcaaaagggctgaaagcaaggctgat
gaggatgatggagcggaggcgtccagcatccagattttcattcaggaagagccagagtgt
cagaatctcagtcagaatcccgggcctccttcagaagcgtcttctaataatttacacagc
ccattgaaaccaagaaattaccaactggagcttgccctgcctgccaagaaagggaaaaat
acaataatatgtgcccctactggttgtggaaaaacctttgtgtcgcttcttatatgtgaa
caccatcttaaaaaattcccatgtggacaaaaagggaaagtggtcttcttcgctaaccaa
attcctgtctatgagcagcaggcaactgtgttctcacgatattttgaaagacttgggtac
aacattgcgagcatttctggggcaacatctgatagcgtctcagtgcagcacatcattgaa
gacaatgatatcatcatcctgacaccccagattcttgtgaacaatctcaacaacggagcc
atcccctcgttgtctgtcttcactctgatgatatttgatgagtgtcataacactagcaaa
aaccacccatacaatcagatcatgttcagatacctagaccacaaacttggagagtcacgg
gacccactgcctcaggtcgttgggctgactgcctccgtcggcgttggagatgctaagacc
gcggaggaagccatgcaacatatctgtaaactctgtgccgccctggatgcctccgtgatt
gccacagtcagagacaacgttgcagaactggaacaggtcgtttataagccccagaaaatt
tccaggaaagtggcatcccggacttcgaacacgtttaaatgcatcatctctcagctgatg
aaggagacagagaagctagccaaggatgtctccgaggaacttggaaagctttttcaaatt
caaaacagagaattcggcacccagaaatatgaacagtggattgtcggcgtccacaaagcg
tgctcagtgtttcagatggcagacaaagaggaggagagccgggtctgcaaagcgctcttc
ctgtacacatcacatttgcggaaatacaacgatgcactcatcatcagtgaggatgcacag
atgacagacgctctaaattacctcaaagccttcttccacgatgtccgagaagcagcattc
gatgagaccgagcgagagcttactcggaggtttgaagaaaaactagaggaattagaaaaa
gtttccagggatcccagcaatgagaatcctaaactaagagacctctacttggtcttacaa
gaagagtaccacttaaagccagagaccaagaccattctcttcgtgaagaccagagcactc
gtggatgctctgaagaaatggattgaagaaaatcctgcactaagctttctaaagcctggc
atactgactgggcgtggcagaacaaaccgggcaacaggaatgacgctcccggcacagaag
tgtgtgctggaggcattcagagccagcggagataacaatattctgattgctacctcggtc
gctgatgaaggcattgacattgctgagtgcaatctcgtcattctctatgagtacgtgggc
aacgtcatcaagatgatccaaaccagaggccgaggaagagcacgagatagcaagtgcttc
ctcctgaccagcagcgctgacgtgattgaaaaagaaaaggcgaacatgatcaaggaaaaa
ataatgaatgaatccatcttaagactgcagacatgggatgaaatgaaatttggaaagacg
gttcaccgcatacaggtgaatgaaaaactcctcagagacagtcagcacaaaccacaacct
gttcctgacaaagaaaacaagaaactgctgtgtggaaagtgcaagaattttgcgtgctac
acagctgacattcgagtggttgagacgtcccactacactgtccttggagacgcttttaag
gagcgctttgtgtgtaagccacaccctaaaccaaagatctatgacaattttgagaagaaa
gcaaagatattctgcgccaaacagaactgtagccacgactggggaatttttgtgagatac
aagacgttcgagattccagtcataaaaattgaaagtttcgtcgtggaagatattgtgagc
ggagttcagaaccggcactcaaagtggaaggactttcattttgaaaggatacagttcgat
cctgcagaaatgtccgtatga
DBGET
integrated database retrieval system
