Massilia sp. NR 4-1: ACZ75_17215
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Entry
ACZ75_17215 CDS
T04026
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mnr
Massilia sp. NR 4-1
Pathway
mnr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mnr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACZ75_17215 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnr03021
]
ACZ75_17215 (rpoB)
03400 DNA repair and recombination proteins [BR:
mnr03400
]
ACZ75_17215 (rpoB)
Enzymes [BR:
mnr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACZ75_17215 (rpoB)
Transcription machinery [BR:
mnr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACZ75_17215 (rpoB)
DNA repair and recombination proteins [BR:
mnr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACZ75_17215 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RnfC_N
UbiD
DNAPolymera_Pol
Motif
Other DBs
NCBI-ProteinID:
AKU22938
UniProt:
A0A0K1K106
LinkDB
All DBs
Position
complement(4137985..4142094)
Genome browser
AA seq
1369 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRANVHNVPFLLATQLESYENFLQEHTAPSTRKNEGLQSAFSSI
FPIVSHNGFARLEFLSYVLGDPAFDVKECQLRGLTFASPLRAKVRLVILDKESPTKPVVK
EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGMTPEQILANFFVFDNFNLRSE
GAEMEFVSERLRGEVARFDIVDPKSGKTLVMKDKRINAKHVRDIEAAGIAHISVPEDYLL
GRVLAKNIVDPETGEVVASANDELTEEVLNRLRDANISAIQTLYTNDLDQGAYISQTLRI
DDTADQTAARVAIYRMMRPGEPPTEESVEALFNGLFYSADRYDLSAVGRMKFNRRIGRDE
LTGAMTLSNEDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVER
AVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRK
VENSMVTDKIDYLSAIEEGRYIIAQANATINNEGKLSDELVSAREAGETILVSPERIQYM
DVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVDSG
TTVQALRGGVVDYIDAGRVVIRVNDEEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVKV
GDRVAKGDVIADGASTDLGELALGQNMTVAFMPWNGLNFEDSILISENVVKDDRYTSIHI
EELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVQAGDTLVGKVTPKGET
QLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIPRDKRAQQIIDDEL
KRFRLDLNDQMRIVEGDAFQRLEKMLIGKVVNGGPKKLAKGAKITKDYLDDLDKYHWFDI
RPAEDDAATALEAIKESINEKRHQFDLAFEEKRKKLTQGDELQPGVQKMVKVYLAVKRRL
QSGDKMAGRHGNKGVVSRIVPVEDMPYMADGTPADVVLNPLGVPSRMNVGQILETHLGWA
AKGLGIRIGEMLQAQIKVEEMRKYLTTVYNESGKKEEIANFSDDEIMGLAHNLKKGVPFA
TPVFDGAHEEEIRRMLDLAYPDEIATKLGMTPSKNQVTMYDGRTGEAFERKVTVGVMHML
KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTV
KSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLLKEIRSLGIDMDLERS
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgcactactcatttactgagaagaaacgcattcgcaaatcattcgcgaaacgcgccaac
gtccacaacgttccgttcctgctggcgacccagctcgagtcttacgaaaacttcttgcag
gagcacaccgctccctcgacgcgcaagaatgaaggcctgcagtcggccttctcctccatc
ttccccatcgtatcgcacaatggcttcgcgcgtctggagttcctctcctacgtgctgggc
gatccggccttcgacgtcaaggaatgccagctgcgcggcctgaccttcgcgtcgccgctg
cgcgccaaggtgcgtctggtgatcctggacaaggaatcgccgaccaagccggtggtcaag
gagatgaaggaacaggaagtgtatatgggcgaactgccgctgatgacgacgaccggttcg
ttcgtcatcaacggcaccgagcgcgtcatcgtttcgcagctgcatcgctcccctggcgtg
ttcttcgagcacgaccgcggcaagacccactcctcgggcaagctgctgttctcggcccgc
atcatcccttaccgcggctcctggctggacttcgagttcgacccgaaagacgtgctgtac
ttccgcgtcgaccgccgccgcaagatgccggtcaccatcctgctgaaggccatcggcatg
acgccggaacagatcctggccaacttcttcgtcttcgacaacttcaacctgcgttcggaa
ggcgcggaaatggagttcgtgtccgaacgcctgcgcggtgaagtcgcgcgcttcgacatc
gtcgatccgaagtcgggcaagaccctggtcatgaaagacaagcgcatcaatgccaagcat
gtgcgcgacatcgaagcggccggcatcgcccacatctcggtgccggaagactatctgctg
ggccgcgtgctggcgaaaaacattgtcgacccggaaaccggcgaagtggtggcctcggcc
aacgacgagctgaccgaagaggtgctgaaccgcctgcgcgacgccaatatcagcgcgatc
cagaccctgtacaccaacgatctggaccagggcgcctacatctcgcaaaccctgcgcatc
gacgacaccgccgaccagaccgccgcgcgcgtggcgatctaccgcatgatgcgtcctggc
gaaccgccgaccgaagaatcggtggaagccctgttcaacggcctgttctacagcgccgac
cgttacgacctgtcggccgtgggccgcatgaagttcaaccgccgcatcggccgcgatgaa
ctgaccggcgccatgacgctgtcgaacgaagacgtgctggccgtgatcaagatcctcgtc
gagctgcgcaatggccgcggcgaagtcgacgatatcgaccacttgggcaaccgccgcgtg
cgctgcgtgggcgagctggccgagaaccagttccgcgccggcctggtgcgcgtcgagcgc
gccgtcaaggagcgtctgggccaagccgaagccgacaacctgatgccgcacgacctgatc
aactccaagccgatttcggccgccatccgcgagttcttcggttcgtcccagctgtcgcag
ttcatggaccagaccaacccgctgtcggaaatcacccacaagcgccgcgtctcggccctg
ggcccgggcggtctgacccgcgaacgcgccggcttcgaggtgcgcgacgtgcacccgacc
cactacggccgcgtgtgcccgatcgaaacccctgagggcccgaacatcggtctgatcaac
tcgctggcactgtacgcccgcctgaacgagtacggtttcctggaaaccccgtaccgcaag
gtcgagaacagcatggtgaccgacaagatcgattacctgtccgccatcgaagaaggccgc
tacatcatcgcccaggcgaatgcgaccatcaataacgaaggcaagctgagcgacgagctg
gtgtcggcccgtgaagccggcgagaccatcctggtgtcgcccgagcgtatccagtacatg
gacgtggccccaggccagatcgtgtccgtggcagcctcgctgattccattcctggagcac
gatgacgccaaccgtgcactgatgggcgccaacatgcagcgccaggccgtgccttgcctg
cgtccggaaaaagccctggtcggtaccggcatcgagcgcaccgtggcggtcgactccggc
accaccgtgcaagccctgcgtggcggcgtggtcgattacatcgacgccggccgcgtggtg
atccgcgtcaacgacgaagaggcgcaagccggcgaagtcggcgtggacatctacaacctg
atcaagtacacccgttccaaccagaacaccaatatcaaccagcgtccgatcgtcaaagtg
ggcgaccgcgtggccaagggcgacgtgatcgccgacggcgcatcgaccgacctgggcgag
ctggcactgggccagaacatgaccgtggccttcatgccatggaatggtctgaacttcgag
gactcgatcctgatctcggaaaacgtcgtgaaagacgaccgctacacctcgatccacatc
gaggaactgtcggtggttgcgcgcgacaccaaactgggtgcggaagaaatcacgcgcgac
atctcgaacctggcggaaaaccagctggcgcgtctggatgaatcgggcatcgtctacatc
ggcgccgaagtgcaggccggcgacaccctggtcggtaaagtgacgccgaagggcgaaacc
cagctgaccccggaagagaagctgctgcgcgccatcttcggtgaaaaagcgtcggacgtg
aaagacacctcgctgcgcgtgccgtcgggcatggtcggcaccgtgatcgacgtgcaagtg
ttcacccgcgaaggcatcccgcgcgacaagcgcgcccagcagatcatcgacgacgagctg
aagcgcttccgcctggacctgaacgaccagatgcgtatcgtcgagggcgacgccttccag
cgtctggaaaaaatgctgatcggtaaagtcgtgaacggcggtccgaagaagctggccaag
ggcgccaagatcaccaaggattacctggacgatctggacaaataccactggttcgacatc
cgtccggccgaggacgatgccgccaccgccctggaagcgatcaaggaatcgatcaacgag
aagcgccaccagttcgacctggccttcgaagagaaacgcaagaaactgacccagggcgac
gagctgcagcctggcgtgcagaaaatggtcaaggtctacctggccgtgaaacgccgcctg
cagtcgggcgacaagatggcgggccgccacggtaacaagggtgtggtgtcgcgcatcgtg
ccggtggaagacatgccgtacatggccgacggcacgccggccgacgtggtgctgaacccg
ctgggcgtgccatcgcggatgaacgtgggtcagatcctggaaacccacttgggctgggcg
gccaaaggtctgggcatccgtatcggcgaaatgctgcaagcgcagatcaaggtcgaagag
atgcgcaaatacctgaccaccgtgtacaacgagtcgggcaagaaggaagagatcgccaac
ttcagcgacgacgagatcatgggcttggcgcacaacctgaaaaaaggtgtgccgttcgcg
accccggtgttcgacggcgcgcacgaagaggaaatccgccgcatgctggacctggcgtac
ccggacgagatcgcgaccaagctgggcatgaccccgtccaagaatcaggtcaccatgtac
gacggccgcaccggcgaagcgttcgagcgcaaagtcaccgtgggcgtgatgcacatgctg
aaactgcaccacttggtcgacgacaagatgcacgcccgttccaccggtccttactcgctg
gtgacgcagcagccgctgggcggtaaagcccagttcggcggccagcgcttcggtgagatg
gaggtgtgggcgctggaagcttacggcgcgtcctacgtgctgcaagagatgctgaccgtg
aagtccgacgacgtgaacggccgtaccaaagtgtacgagaacctggtcaagggcgatcac
gtgatcgacgccggcatgccggaatcgttcaacgtgctgctgaaagagatccgttccctg
ggtatcgatatggacctggaacgcagctaa
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