Mycolicibacterium rhodesiae: MycrhN_5940
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Entry
MycrhN_5940 CDS
T01685
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mrh
Mycolicibacterium rhodesiae
Pathway
mrh03030
DNA replication
mrh03410
Base excision repair
mrh03420
Nucleotide excision repair
mrh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mrh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MycrhN_5940
03410 Base excision repair
MycrhN_5940
03420 Nucleotide excision repair
MycrhN_5940
03430 Mismatch repair
MycrhN_5940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrh03032
]
MycrhN_5940
03400 DNA repair and recombination proteins [BR:
mrh03400
]
MycrhN_5940
Enzymes [BR:
mrh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MycrhN_5940
DNA replication proteins [BR:
mrh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MycrhN_5940
DNA repair and recombination proteins [BR:
mrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MycrhN_5940
NER (nucleotide excision repair)
GGR (global genome repair) factors
MycrhN_5940
MMR (mismatch excision repair)
DNA ligase
MycrhN_5940
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MycrhN_5940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AEV76402
UniProt:
G8RQD6
LinkDB
All DBs
Position
complement(6012602..6014710)
Genome browser
AA seq
702 aa
AA seq
DB search
MSPKATPDPKTTLAEHSEDAPDADLRRRWQELADEVRDHQFRYYVRDSPTISDAEFDKLL
RELQALEDAHHELRTPDSPTQLVGGAGFATDFTSADHLERMLSLDNVFAPDELAAWAART
KGEIGDDAHYLCELKIDGVALALVYRDGRLERAATRGDGRTGEDVTLNARTIDDIPEKLT
GSKELPVPTLLEVRGEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTAR
RKLRMICHGLGRAEGFSPKTLHDAYRALGEWGLPVSDHTARVKGIDAVTEHIAYWGEHRH
DVEHEIDGVVVKVDEIALQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIKVNVGRTGRVT
PFAFMEPVKVAGSTVSQATLHNASEVVRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGS
EREFVMPTTCPECGTTLAPAKEGDADIRCPNTRSCPAQLRERVFHVAGRGAFDIEGLGYE
AAVALLQAGVITDEGDLFTLGSSDLLQTDLFTTKDGNLSANGKRLLVNLHEAKSKPLWRV
LVALSIRHVGPTAARALATEYGTLDAIMAASEEELAVVEGVGPTVAAAVTEWFTVDWHRA
IIDKWRAAGVRMADERDTSIERTLEGLSIVVTGSLTGYSRDDAKEAIVARGGKAASSVSK
KTAYVVAGDSPGSKYDKAVELNVPILDEDGFTRLLATGPDGV
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgagcccgaaggcgacgcccgacccgaagaccacgctggcagaacactccgaggacgcc
cccgacgccgatctgcgccgccgctggcaagagctggccgacgaggtgcgcgatcatcag
ttccgttactacgtgcgcgactcaccgaccatctcggacgccgagttcgacaagctgctg
cgcgaactgcaggccctcgaagacgcgcaccacgagctgcgaacccccgattctccgacg
caactggtcggcggcgccggcttcgccaccgacttcacctctgcggatcacctggagcgg
atgctgtcgctggacaacgtgttcgcgccggacgagctggcggcgtgggccgcgcgcacc
aagggcgagatcggcgacgacgcgcattacctgtgcgagctcaagatcgacggcgtcgcg
ctggcgctggtgtaccgcgacggacggctggagcgtgcggccacgcggggcgatggtcgc
accggcgaggacgtgacactgaatgcgcgcacgatcgacgacatccccgaaaagctgacc
ggcagcaaggaattgccggttcccacactcctcgaggtgcgcggtgaggtgttcttccgt
gtcgccgacttcgaagacctcaatgccgggctcgttgccgagggcaaaccgccgttcgcc
aatccgcgcaacagcgcggccggctcgctgcgccagaagaaccccgccgtcaccgcgcgc
cgcaagctgcggatgatctgccacggcctcggtcgcgccgagggcttcagccccaagacg
ttgcacgacgcatatcgcgcgctgggggagtgggggctgccggtgtccgatcacaccgcc
agggtcaaggggatcgacgcagtcaccgagcacatcgcgtactggggcgagcaccgacac
gacgtcgaacacgaaatcgacggtgtcgtagtcaaagtcgacgagatcgcgctgcagcgg
cgcctcggttcgacctcacgcgccccccggtgggcgatcgcctacaagtacccgcctgaa
gaggcgaccacgaagctgctcgacatcaaggtcaacgtggggcgcaccggccgggtcacc
ccgttcgccttcatggagccggtgaaggtcgcgggctccaccgtcagccaggcgacgctg
cacaacgcatccgaggtcgtccgcaagggcgtgctgatcggcgacacggtggtgatccgc
aaggccggcgacgtcattcccgaggtactcggaccggtcgtcgatctgcgtgacggctct
gaacgcgaattcgtcatgcccacaacgtgtcccgaatgcggaaccactctcgcgccggcc
aaggagggcgatgcggacatccgctgtcccaacacgcggtcgtgcccggcgcagctgcgg
gagcgcgtgttccacgtcgcggggaggggcgcattcgacatcgagggcctcggctatgag
gcggcggtcgcgctcctgcaggcgggcgtcatcaccgacgaaggtgacctgttcaccctc
ggcagttccgatctgttgcagaccgacctgttcaccaccaaggacggcaacctgtcggcc
aacggcaagcgactgttggtgaatctccatgaggccaagtcgaaaccgctgtggcgggtg
ctggtggcgttgtccatccgccatgtgggtccgaccgctgcccgggcgctggccaccgag
tacggcacgctcgacgcgatcatggccgcgtcggaggaggaactcgcggtcgtcgaaggc
gtgggccccaccgtcgctgccgcggtgacggaatggttcaccgtcgactggcaccgcgcg
atcatcgacaagtggcgcgcggccggcgtgcggatggccgacgaacgcgacacgagcatc
gagcgcacgctcgaaggactgtcgatcgtcgtcaccgggtcattgacggggtactcccgc
gacgacgccaaggaggccatcgtcgcgcggggaggtaaagccgccagttccgtgtcgaag
aagaccgcctacgtcgtggcgggcgactccccgggatcgaagtacgacaaggccgtcgaa
ctcaatgttccgatcctcgatgaagacggcttcacccgcctgctggcgaccgggcccgac
ggcgtctag
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