KEGG   Methylocystis sp. SC2: BN69_1443Help
Entry
BN69_1443         CDS       T02324                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
msc  Methylocystis sp. SC2
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:msc00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BN69_1443
Enzymes [BR:msc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BN69_1443
DNA repair and recombination proteins [BR:msc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BN69_1443
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1513704..1516262
Genome map
AA seq 852 aa AA seqDB search
MSLADYRKKRDFAATREPKGRGVRKTGSSFVVQKHAARRLHYDLRLEMDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLDYRNFEGVIPEGQYGAGEVIVWDKGVWIPEGDPHKGYAKGH
LDFELRGKKLGGRWHLVRMARKPREKHDNWLLIKGDDEFARAPEDADILEELPRSVDTGR
TIGDVADGKRAPRPKKSALPKQSAASRLDKTTSPATPQAPAVDTDPSRLKGAKKAPPPNF
IAPMQASSGTAPASKEWIHEIKFDGYRVQARIEAGRVRLLSRSGLDWTKKFGDEVASALR
ALPLGAGLIDGEIVVETSSGASDFSALQADLSAGRTDRFVYWVFDLLYLDGYDLRGATLL
ERKRLLQRLLGAESDDKVRLSLHFEDSGAVVLAHACRLGLEGVVSKLRESPYRSGRVKSW
IKAKCFARQEFVVAGYTPSTVSRRAIGALVLGVYQNGVLCHVGRVGTGFTADMAHELFAK
LDPLRASSNPFGARLSADAARHVRYVRPELVAEVEFRGWTGDQNLRHASFRGLREDKDAR
DVVRESAPQVERVTAARAEQSVVRLTHPDRLYWPDQGVTKQGLADYYADIWRFIAPFIVN
RPLALLRCPNGVEGEKFFQKHAWKGIDPNIVLIDDPKGEEEPLLSIKDLNGLTALVQSGA
LEIHPWGSTASDWERPDVIIMDLDPGEQVAWESVIAAAEETRERLQDLGLAAFVKTSGGK
GLHVVAPVKPKAAWPEVKAFTKSIADAMTRDSPSKYVATITKSKRRGKILVDYLRNQRGA
TAVAPYSTRARPGAAVSMPLAWDELSPAIGPDYFTIAKTLARLESLQNDPWGDFRQAAAP
IETPKARKRRKT
NT seq 2559 nt NT seq  +upstreamnt  +downstreamnt
atgtcgcttgccgattaccgcaagaagcgcgactttgcggcgacgcgcgagccgaagggg
cgaggcgttcgaaagaccggcagcagcttcgtcgtccagaaacatgccgcaaggcggctg
cactacgatcttcgcctggagatggacggcgttttgaaaagttgggctgtgaccagaggc
ccaagtctcgtgcccggcgagaagcggcttgccgttcacgtcgaggaccaccctctcgac
tatcgcaatttcgaaggcgtcattccggaaggccaatatggcgccggcgaagtgatcgtg
tgggacaagggcgtctggattccggaaggcgacccgcataagggttacgccaagggccac
ctcgatttcgagctgcgcggcaagaagctcggcggacgttggcatctcgtgcgcatggcc
cgaaagccgcgggagaagcatgacaattggctgctcatcaagggcgatgacgaatttgcg
cgtgcgcccgaagatgcggacatacttgaggagttgccgcgctcggtcgacaccggacgc
acgatcggcgatgtcgcggatggcaagcgggcgccgcgcccgaagaaaagcgccctgccg
aagcagagcgccgcgtcgcgcttggataaaacgacttccccagcgacgccgcaagcgcct
gcggtggacaccgacccgtctcgtctcaagggcgcaaagaaggcgccgccgccgaatttt
attgcaccgatgcaggccagttccggcaccgcgccggcgagcaaggaatggattcacgaa
atcaaattcgacggctatcgcgtgcaggcgcgcatcgaggcgggacgcgtgcggctgctc
tcgcgcagcggcctcgactggacgaagaaatttggcgatgaggtcgcgtcggcgctgcgc
gccctgcctctcggcgccgggctcatcgacggcgagatcgtcgtcgagacgagctcaggc
gcgtcggatttctccgcgctgcaggccgatctgagcgccgggcggaccgatcgcttcgtc
tattgggtcttcgatcttctttacctcgacggctatgatctgcgcggcgcgaccttgctg
gaacgcaaacggctgctgcaacgactcttgggcgccgaaagcgacgataaggttcgctta
agtcttcactttgaggacagcggcgccgtcgtgctggcgcatgcctgccggctcggcctc
gaaggcgtggtgtcgaagctgcgggagtcgccctatcgttccggccgcgtgaagagctgg
ataaaggccaaatgcttcgcgcggcaggaattcgtcgtcgcgggctatacgccctcgacg
gtgtcgcgccgggcgatcggcgccctggtgcttggcgtctaccagaatggcgtcctttgc
catgttggccgcgtcggcacgggatttacggccgacatggcgcatgagcttttcgcgaag
ctcgatcccctgcgcgcctcctcgaatccttttggcgcgcggctcagcgcggatgcggcg
cgccatgtgcgctacgtgcggcccgaactggtggccgaggtcgaatttcgcggctggacg
ggcgatcaaaatcttcggcacgcctcctttcgcgggctgcgcgaagataaggacgcgcgc
gacgtcgtccgcgaaagcgcgccgcaggttgagcgggtgacagcggcgagagcggagcaa
agcgtcgtgaggctcacccatcccgatcggctctattggccggatcaaggcgtcaccaaa
cagggcctggcggattactacgccgacatctggcgctttatcgcgcccttcatcgtcaat
cgcccgctggcgctgctgcgctgccccaacggcgtcgagggagagaagttcttccagaaa
cacgcttggaaaggcatcgatccgaacatcgtgctcatcgacgatccgaaaggagaagaa
gagcccctgctcagcatcaaggacctcaacggcctgaccgcgctcgttcaatccggcgcc
ttggaaattcatccctggggctcgacggcgtctgactgggagcgccccgacgtcatcatc
atggatctcgatcccggcgaacaggtcgcgtgggagtcggtcattgcggccgcggaagaa
acgcgggagcggctccaagaccttgggctcgccgccttcgtgaaaacgtcaggcggaaag
gggcttcatgtggtggcgcccgtgaagcctaaagcggcgtggccagaggtgaaggctttc
accaaaagcatcgccgatgcgatgacgcgtgacagcccgagcaaatatgttgcgacgatc
acgaaatcgaagcgccgcggcaagatactcgtcgactatctgcgcaatcagcgcggcgcc
acggccgtcgcgccctactccacccgcgcccgtcccggcgccgccgtgtcgatgccgctc
gcctgggacgaacttagtccggcgatcggacctgactatttcacgatcgcgaaaaccctc
gcccgcctcgagtcgctgcagaacgatccctggggagactttcgtcaagcggcggcgccg
atcgaaacgccgaaggcgcgcaaaaggagaaaaacctag

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