Marinobacter salarius: AU15_13005
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Entry
AU15_13005 CDS
T03593
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
msr
Marinobacter salarius
Pathway
msr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AU15_13005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msr03019
]
AU15_13005
Enzymes [BR:
msr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AU15_13005
Messenger RNA biogenesis [BR:
msr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AU15_13005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHI31861
UniProt:
W5YRY6
LinkDB
All DBs
Position
2690032..2691318
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AA seq
428 aa
AA seq
DB search
MTSDAPEAGKTFFKDLNLDQRVLDAITDIGFEHCTPIQAETLPFTLACQDLIGQAQTGTG
KTAAFLITAIQSMLETPIPKEDRFASEPRVLALAPTRELAMQIAKDAEQLCGYTGHNVVT
VVGGMNYDKQRDQLQNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFI
PDVKRIIRKCTPKEERQTLLFSATFNQDVLNLASMWTKSAEFVEIEPEQKTAERVKQTVY
LVGEDEKLPVLVNYLQRPEVEKAIVFANRRDQCRDLDEDLRNQGVKVALMSGEIAQNKRL
KTLEQFKNGSIQVLVATDVAGRGIHVDGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVS
VSFASEDDAFSLPAIESYISQKLTTAVPDEALMTELAKPPITRKRGGRRPQGNRSQGGRG
GNQRQRRN
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgacatctgacgcacccgaagccggcaaaaccttcttcaaggatctcaaccttgaccag
cgagtgctcgatgccatcaccgatatcggttttgagcattgcacacccatccaggcagag
actcttccgttcaccctggcgtgccaggacctgatcggccaggctcaaaccggcaccggt
aaaaccgccgcattcctgatcactgctatccagagcatgctggaaacgccgattccgaaa
gaggacaggttcgcctcggaaccccgggttctggccctggcgccaacccgtgaactggcc
atgcagatcgccaaggacgccgagcaactatgcggctacacgggccataatgtggtcacc
gtggtgggtggtatgaactacgataaacagcgcgatcagctccagaacgagatcgttgac
atactggtggcaaccccgggccggctgattgatttcctgggctctcaggacgtttttctc
gaccagctcgacatcctgattctggatgaagcggatcggatgctggacatgggctttatt
cctgatgtaaagcgcattatccgcaagtgcacgccaaaggaagagcgtcagaccttgctg
ttcagcgccacctttaaccaggacgtcctcaacctcgcctcgatgtggaccaaaagtgcg
gaattcgtcgagatcgaaccggaacagaagaccgccgagcgagttaagcagactgtctac
ctggtgggcgaggatgaaaaactgccggtactggtcaactatcttcagcgccccgaggtg
gaaaaagccatcgtctttgcgaaccgtcgtgaccagtgtcgtgacctggatgaggacctt
cgcaaccagggcgtaaaggtcgcgctgatgtcaggggaaatcgcccagaacaagcggctg
aagacattggaacagttcaagaatggcagcattcaggtgctggttgccacggatgtcgcc
ggtcgtggtatccacgttgacggtgtaacccacgtattcaactataatctgccggacaac
gctgaggattacgttcaccgtatcggacgcaccggtcgggcagggaagcacggtgtctct
gtcagctttgccagtgaggacgatgccttttcactgccggctatcgagtcctacatcagc
cagaaactgaccacggcggtgccggatgaagcgctgatgaccgaactcgccaaaccgccg
atcactcgcaagcgtggtggccggcgtccccaaggcaaccgcagccagggtggacgtggc
ggaaaccagcgtcaacgcaggaactaa
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