Methanosphaera stadtmanae: Msp_0009
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Entry
Msp_0009 CDS
T00313
Name
(GenBank) putative single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mst
Methanosphaera stadtmanae
Pathway
mst03410
Base excision repair
mst03430
Mismatch repair
mst03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Msp_0009
03430 Mismatch repair
Msp_0009
03440 Homologous recombination
Msp_0009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mst03400
]
Msp_0009
DNA repair and recombination proteins [BR:
mst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Msp_0009
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Msp_0009
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Msp_0009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
DHH_CID
Motif
Other DBs
NCBI-ProteinID:
ABC56429
UniProt:
Q2NIB0
LinkDB
All DBs
Position
complement(11403..12770)
Genome browser
AA seq
455 aa
AA seq
DB search
MIQKQQLYLLNRADEACNLLRLHIEKGHVVRIISHNDADGLTSAGIFANAIKKAGGKFHI
TILPRLRDSNVKELNKSRYKLFIFSDMGSGNLESISKLKGDVIIADHHQVPEGVNPEIQV
DNKEIIHVNPHIFNIDGTKEVSGSGLSYLSVHGYEYYELAGLALTGAYGDMQFKNGPQGI
NKLILDEGVANNTLVMKNELKLAYANTQTLDKSITYTYTPIINGLSGDLEKTRIFLEEHD
IPKDKLLHQLSPEEYETLKNELISINEDIYGKIYTIPNIRNELTNIEEYSNLLNACGKNK
EYTAAISIQMGKYQQMEYAKSLLSKYGSTMQNGIEWIKREGSIEKENIQYIYTEDKEQKK
IAAAVSSIGIDLGLLPDKPILSLMKMDNLIKVSSRTTDNMIEKGVNLGVIMNQASNNFNG
SGGGHNIAAGATIPANQKDNFIHLVDEMVEYQIKK
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgatccaaaaacagcagctttacttgttaaatagagctgatgaagcttgtaatcttctt
agattacatattgaaaaagggcatgttgtgagaattatttctcacaacgatgctgatgga
ctaacttctgctggaatttttgcaaatgcaataaaaaaagcaggaggtaaattccatatt
acaatattaccacgtcttagagacagtaatgttaaagaacttaataaatccagatataaa
ttatttattttctctgatatgggaagtggaaatctagaaagtatttctaaattaaagggt
gatgttattattgctgatcatcatcaagtacctgaaggtgttaatccagaaatacaagta
gataataaagaaataattcacgtaaatcctcatatttttaatattgatggaaccaaagaa
gttagtggttcaggtctttcatatttatctgtacatggatatgaatattatgaattagca
ggtttggctctaactggtgcatatggagatatgcaatttaaaaatggtcctcaaggaatt
aacaaactaattttagatgaaggtgttgcgaataatacacttgttatgaaaaatgaatta
aaattagcttatgcaaatactcaaacacttgataaatccatcacatacacgtatactcca
ataattaatggattatctggagatttagagaaaacaagaatatttttagaggaacatgac
attcctaaagataagttacttcatcaattatccccagaagaatatgaaactcttaaaaat
gaattaataagtattaatgaggatatttatggaaaaatatacactattccaaatattaga
aatgaattaactaatattgaggagtattctaacctattaaatgcatgtggtaaaaataaa
gaatatactgctgcaataagtattcaaatgggaaaatatcaacaaatggaatatgctaaa
tcattactttctaagtatggtagtactatgcaaaatggaattgagtggataaaaagagaa
ggtagtattgaaaaggagaatattcaatatatctatactgaagataaggagcagaagaaa
attgctgctgctgtaagtagtattggtatagatcttggattattaccagataaacctata
ttaagtcttatgaagatggataaccttattaaagtatcctcaagaaccactgataatatg
attgaaaaaggagtaaatcttggtgttattatgaaccaagcatcaaataactttaatggt
tctggtggtggacataacatagcagctggtgcaactataccagcaaatcaaaaggataat
ttcatccatcttgttgatgaaatggttgaatatcaaattaagaaataa
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