Allomeiothermus silvanus: Mesil_2016
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Entry
Mesil_2016 CDS
T01246
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
msv
Allomeiothermus silvanus
Pathway
msv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mesil_2016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msv03019
]
Mesil_2016
Messenger RNA biogenesis [BR:
msv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mesil_2016
BRITE hierarchy
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GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Motif
Other DBs
NCBI-ProteinID:
ADH63888
UniProt:
D7BH35
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Position
complement(2011621..2013357)
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AA seq
578 aa
AA seq
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MNDIPNRSPNQRGPRKRRMRPKPTGPVILAKPSEHVEIIPLGGMGEIGKNMFAFRYHDEI
LVVDGGLAFPEEHMPGVDLLIPRIDYLLEHQELIKGWVLTHGHEDHIGALPFIMPQLPRV
PVYGAKLTLGLVKGKLEEFGLRAGDFNFKEVSPDERIQIGRFFVVDLFRMTHSIPDNSGM
IIHTPIGKIVHTGDFKLDPTPIDGKTSHLAKIAQAGAEGVLLLIADSTNAERPGITPSES
EIAKGLDAIIGKAKGRIFVTTFASHIHRIQSVITAAEKYGRKVAMEGRSMLKFSRIAHEL
GYMSVRDRIYTLDEINHLPDEQVLVLSTGSQGQPEAALSRLAFGGHAKFALKPGDTVILS
SSPIPGNEEAVNRVINQLYRLGTYVYYPPTYRVHASGHASQEELKIILNLTNPKFFLPWH
GENRQQTNFKWLAESMGHPPQQTLIVENGARVKLTADSISVDGQVPAGVLYVDGLGVGDI
TDEILEDRQHMAAEGVVVIAALVSREAPTVQIVSKGFVKAGERLLSEVRNLVFEAIHTGV
REKKRLEVIRDDIYYPVKKFLRKATGRDPVIIPMVIEG
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacatccccaaccgctcccctaaccaacgggggccccgcaaacgccggatgcgt
cccaagcccaccggcccggtgatcctcgccaagcccagcgagcacgtggagatcatcccg
ctggggggcatgggcgagatcggcaaaaatatgttcgccttccgctaccacgatgagatt
ctggtagtagacggcggtttggctttccctgaagaacatatgccgggggtagacctactg
atcccccggatcgactatctcctggagcaccaggaactcatcaaaggctgggtgctcacc
cacggccatgaagaccacatcggagccttgccctttatcatgccccagcttccccgggtt
cccgtttacggagctaagctcaccctgggactggtcaaggggaagctcgaggagttcggc
ctgcgtgccggggattttaacttcaaggaagtctcgcccgatgagcgtatccagattggg
cgcttcttcgtcgtagaccttttccgcatgacccactctatccccgacaactcggggatg
atcatccatacccctatcggcaaaattgtccacaccggggacttcaagctggaccctacc
cccatcgacggcaaaaccagccacctggctaaaatcgcgcaagctggggctgagggggtg
ctgttgctcatcgccgactccaccaacgccgagcggcccggcatcacccccagcgagtcg
gagattgccaagggcctcgacgctatcatcggcaaagccaagggccgcatcttcgtcacc
accttcgcctcgcacatccaccgcatccagtcggtgattaccgccgccgagaagtacggg
cgtaaggtagcgatggaaggccgcagcatgctgaagttcagccggatcgctcatgagttg
ggctacatgagcgtgcgcgaccgtatctacacccttgacgagatcaaccacctgcccgat
gagcaagtcctggtgctctccactggctcgcagggtcagcctgaagccgccctctcccga
ctggccttcggcggacacgccaagttcgccctcaagccaggcgatacggtaatcctctcc
tcgagccctatccccggcaacgaggaagcggtaaaccgggtcatcaaccagctgtatcgg
ctggggacttacgtctactacccgcccacctaccgggtgcacgcttccggccacgcctcg
caggaagaactcaagatcatcttgaaccttactaatcctaagttcttcttgccctggcac
ggggaaaaccgccagcagaccaacttcaagtggctggccgagagcatgggacatccgccg
cagcaaaccctgatcgtggagaacggagcgcgggtcaagctcactgcggatagcatcagc
gtggatggccaggtaccggcgggcgtgctctacgtggacgggctaggggtgggcgatatc
accgacgaaatcctcgaggaccgccagcacatggccgccgagggcgtggtggtcattgcc
gcgctggtaagccgcgaggcgcccaccgtgcagatcgtttccaagggtttcgtaaaggcc
ggggagcgtctgctctccgaggtacgtaatctggtttttgaggctattcacaccggggtg
cgggagaaaaagcggctcgaggtcatccgcgacgatatctactacccagtgaagaaattc
ctgcgcaaagccaccgggcgtgacccggtcatcatcccgatggtgattgaggggtaa
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