Allomeiothermus silvanus: Mesil_3363
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Entry
Mesil_3363 CDS
T01246
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
msv
Allomeiothermus silvanus
Pathway
msv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mesil_3363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msv03019
]
Mesil_3363
03400 DNA repair and recombination proteins [BR:
msv03400
]
Mesil_3363
Enzymes [BR:
msv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mesil_3363
Messenger RNA biogenesis [BR:
msv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mesil_3363
DNA repair and recombination proteins [BR:
msv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Mesil_3363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C_2
Helicase_C
RNase_T
ResIII
RecQ_Zn_bind
AAA_22
DEAD_2
RQC
Motif
Other DBs
NCBI-ProteinID:
ADH65175
UniProt:
D7BJ19
LinkDB
All DBs
Position
pMESIL01:complement(172332..177365)
Genome browser
AA seq
1677 aa
AA seq
DB search
MSTARDWVALDLEAAAPDPAEAHILEIAAQDMQGHSRRWYIDTPEPLKPDHEAFRFTGID
FHEYEREKVPRERAFKELLDFLGDRPLLGHNLLRYDLPLLKRALREVGLELPSTAQPALD
TLRLAQLVFPLPPEGLSGYRLGDLYRYFTDEELTGAHRAGADVEATWKVLAGLVLQKLPD
GVARAWRELGLIEGELFVDTPGQVRDLLATPAWVESVFYDGRPLPHPSGLGSDLLTTRRD
AQDAMFQAVEGALRNGRRVFLEAPTGTGKTKGYLYPALHVNETTWVATHTKVLQAQALKE
LKELGEKGYQVKAALVKSPRDTLCPEALFELFLDARGEEDEEFRTAVGLLLHYAALGGHD
LEALPGYWHFSKGFREARGRVGTNPRRCREDCAFFHTCAFQHQLGQRNGAQIRVTNQAYL
LAHLLREEEGEGEEVAVHLVLDEAHHLEDTATEALSLVLDHEEFAHQLNRLAHPSKDRGL
LKDHRRLSELPEEEQDKAKEVVQKLLPRLREALGNYSRHLVAFIKNRGSGDPRYGLSLGL
SGAWKRLEEWPRINQEEQLLIQILGELKAALSAIGQDSRSLMARDLAPLREYLKEALDML
FERRRVLGLAKGEPDPNRLHLSEWDPTTGSWRHLAQPIDVSRALEAKLWPRFKGIVLTSA
TLSVPTEQDPEGFGLQKRVLGLNEAEHHRLPPSLPYEKAHLLVPRHLPEAREGTLPRFQR
MLHEELRVLLPKSHRSLSLFTSLKRLHEAKDALQDHPHLLVPLTRKEREDIASRIKQNPE
APLAALGSRSYMEGVDFPALKLVSLERIPFPLPSLLLSKRMERAYEQGLDKWWDYYLPKA
VLSFAQAFGRLIRDQRVGVGDGAFILWDKKLLNAAYQVAFYRALPPGVQQHFPEDRKDLY
DRLAKILEVERNQLPWDELEDEALRQLRAILQTDLEPLAKARRIAEQVYGLLLVEDRWGK
QAEAIRGALEGQDLVALLPTGFGKSLAFQLPAFMQEGLTLVISPLVALMKDQADRLLELG
LPVGAVHSLMGSGEQRSVLDEVRAGRVQLLYVSPERLNRSKTLWNLIQEVHSAGKLRRVV
FDEAHCLVEWGFDFRPDYLKVLERLKALEGVPRSFFTATLALKDLKRLQEAARLETSQLI
KPESFHRPNLRFVVRKAKGEAGKFQVLAKALHWLTECGEGGSAIVYTATRAEAERLSWAL
GRLFPDLEVEAYHAGLGPVPRREAQERFISGQIRVMVATTAFGMGIDKPDIRLVIHWRPP
RSLEEYVQQSGRAGRDGKTAYCLLLHTGADWSFLEWAVGVGQASKAQADFANLLIDLLSE
EGTLIRYSKQLYERIYERIYSSESEESEAEDALAEDPEEGDTEDEEEATATPLRRELGLE
NLERTLSSLERARVLEYEYRPGKALLQASEDVLRECLTDEEIALLHKVGYGGAERGDGLD
FSQIPPEKALELDQRLYRLFRERRIGLYHYREPLLYIRAGQGLEVGYRHWDQERRELEKS
AKERLAQVRRYAENARCRTQVLLKHLGESSAACAVCDVCERDPGPWEALEGLEEEDLERA
YRPLDTLLAFFAWAEESARSREARYMYLGERSTLMALRGQDRGKSGSLGRKYTDNRFFGH
LSFIKPKELKRTFKAALKEGYLEPKGAYEGSPLYGLTERGRARHERRLRQEVAHGGA
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacagcgagagactgggtggccctggatcttgaggccgccgccccggacccagcg
gaagcacacatcctcgagattgccgctcaggacatgcaggggcattcccgccgctggtat
atcgatacccctgaacccctaaaaccggatcacgaagcgttccgctttaccggtattgac
ttccacgagtacgagagggaaaaggtaccgcgcgaaagggcattcaaggaactcctggac
ttcctgggcgaccgccccctcctcggccataacctgctacgctacgaccttcccttgctg
aagcgagccttacgggaggtgggcctggagctcccctccacagcgcagcccgcgctggat
accctgcgcctggcccagttggtctttccccttccacctgaggggctttccggctatcga
ttgggggatctctaccgctacttcaccgatgaggaactgaccggtgctcaccgggctggg
gctgacgtagaggccacctggaaggtcctggctgggctggtgctgcaaaagctgcccgac
ggggtggcccgggcctggcgtgagcttgggctcatcgagggggagctgttcgtggatacc
ccaggccaggtcagggatcttctagccaccccggcttgggtggagtcggttttctacgac
ggtcggcccctgccccatccctccggtttgggctcggatctgctgactacccgtagagat
gcccaggatgcgatgttccaggcggtggaaggagccttgcggaatgggcggcgggttttc
ctcgaggcccccaccggcaccggcaagaccaagggctatctataccccgccctgcacgtg
aacgaaacaacctgggtagccacccataccaaggtgctacaggcccaggccctgaaggag
ctcaaggagctaggcgagaagggctaccaggtaaaagctgccctggtcaagagccccagg
gacaccctctgcccggaggccctcttcgaactctttctggacgccaggggagaagaggat
gaagagtttaggaccgcggtgggcctgctcctgcactatgcggctttagggggtcacgac
ctcgaggcccttcccggctactggcacttctccaagggcttccgcgaggcgagaggccgg
gtaggcaccaatcctcgccgctgccgggaagactgcgcctttttccacacctgcgccttc
cagcaccagctgggtcagcgcaatggggcccagatccgggtaaccaaccaggcctacctt
ctggcccacttattgcgggaagaggagggggaaggagaagaggtagcggttcacctggtc
ctggacgaggcccaccacctcgaggacaccgccaccgaggccctctccctggttttggat
catgaggagttcgcccatcagctcaaccggctggcccaccccagcaaggatcgtggcctt
ctcaaggaccatcgacggctgagcgagctgcctgaggaggagcaggacaaggccaaagag
gtcgttcagaagctgcttcccagactgcgtgaggccttgggcaactattcccgtcatctg
gtggcctttatcaagaaccggggttcgggggatccgcgctacggcctcagcctggggctg
agcggcgcctggaaaaggcttgaagagtggcctcgcatcaatcaagaagaacagctgctc
atccaaatccttggtgaactcaaagcagcgctcagcgctatcggacaggattcgagaagc
ctcatggcccgcgatctggcaccccttcgggagtatctcaaagaagccttggatatgctc
ttcgagcgccgccgggttctggggctggccaagggggagcccgaccccaaccggctccac
ctttcggagtgggatccgaccaccgggagctggcggcacctggcgcagcccattgacgta
tcgcgcgcgctcgaggccaagctgtggccccgctttaagggcatagttctcaccagcgca
accctgagcgtgcctaccgagcaagaccccgagggctttggtctgcaaaagcgggtcctg
ggcttgaacgaagccgagcaccaccggctgcctccctctttgccctacgaaaaggcccac
ctgctggtgccccgtcacctccccgaggctcgcgagggcaccctgccccgctttcagcgc
atgctccacgaggaactcagggttctcctgcctaaatcccaccgcagcctctccctcttc
accagcctgaagcgcttgcacgaagctaaggatgccctgcaggaccatcctcacctcctg
gtccccctcactcgcaaggagcgcgaagatatcgccagccgcatcaagcagaaccccgag
gcccccttggccgccctggggtcgcgaagctacatggaaggggtggacttcccggcattg
aagctggtgagcctggagcgcattccctttcccttaccctccctactgcttagcaagcgc
atggagcgggcctatgagcaagggttggacaagtggtgggattattaccttcccaaggcc
gttctttccttcgcccaggctttcggccgactcattcgggatcagcgggtgggggtgggg
gacggggccttcatcctgtgggacaagaagctactcaatgctgcttaccaggtagccttt
taccgtgccctgccgccgggcgttcagcagcacttccccgaggatcgcaaagacctttac
gaccggctcgcaaaaatcctggaggtggagcgaaaccagctcccttgggatgagctggaa
gatgaagccttgcgccagctgcgggcgatcctgcagaccgacctcgagcccctggcaaaa
gcccgacgtatcgcggagcaggtctatgggcttttgctggttgaagaccgctggggcaaa
caggcggaggctatccggggggccctggagggccaggacctggtagctctgctccctacc
ggcttcggcaagagcctggccttccagctcccagccttcatgcaggaggggctcaccttg
gtgatctctcccttggtggccttgatgaaggatcaggccgaccggcttctggagctgggc
ctgccggtgggtgcggtgcactcgctgatgggatcgggggagcaaaggagcgtgctggat
gaggtcagggccgggcgggtgcaactcctgtatgtaagcccggagcggctcaaccgcagc
aagaccctctggaacctgatccaggaggtgcattctgcggggaaactgcggcgggtggtt
ttcgacgaggcccactgcctggtggagtggggcttcgactttcggcccgactacctcaag
gttctggaaaggctgaaggctctagaaggggttccccggagctttttcaccgctaccctg
gccttgaaggatctcaagcggctgcaggaagccgctagactggaaacctcccagctcatc
aagcccgagagcttccaccgccccaacctccgctttgtggtgagaaaggctaagggggaa
gcgggcaagttccaggttctggctaaagcgctgcattggctcacggagtgtggggaggga
ggcagcgccatcgtctataccgccacccgagccgaggccgagcggctctcctgggctttg
ggccgcctctttcccgacctggaggttgaggcctaccacgcggggctgggcccggtgccc
cgccgcgaggcccaggagcgtttcatctccggtcagatccgggtcatggtggccactacc
gctttcggtatgggcattgacaagccggacatacgcctggtgatccactggcgacctccg
cgcagcctggaggagtacgtccagcagtcggggcgtgcaggaagggatggcaagaccgca
tactgcctgctgctgcataccggggcggactggtcgttcctcgagtgggccgttggagta
gggcaagccagcaaggcccaggcggacttcgccaacctgctgatcgacctcctgagcgag
gaaggcaccctgatccgctactccaagcagctatacgaacgcatttacgaacgcatttac
agcagcgaatccgaggaaagcgaagccgaggatgccctcgcggaagacccggaagagggc
gatacggaggacgaggaggaagcaaccgcgacccccctgcggcgggagctgggcctggag
aacctcgagcgcaccctctccagcctcgagcgagccagggtgttggagtacgagtaccgg
ccaggaaaggccttgcttcaggcctccgaggatgtgcttcgtgagtgcctgaccgacgaa
gagatcgctcttttgcataaggttggctacgggggtgcggagcggggggatgggttagac
ttctcccagattcccccagagaaagccctggagcttgatcaaagactttatcggctgttc
agggagcgcagaatcgggctttaccactaccgagagcccctgctttacatcagagcgggc
caggggctggaggtgggctaccgccactgggatcaggagcgccgagaacttgaaaaaagc
gcgaaagaacgcttggctcaggtacggcgctatgccgagaatgcccgctgccgcacgcag
gtgttgctaaagcatctaggagaaagctcggctgcttgcgctgtttgcgatgtctgtgaa
agagatcccggtccctgggaagccctggaggggctggaggaagaggatctcgagcgggcc
taccgccccctggataccctgctggctttcttcgcctgggccgaggaaagcgcccggtcg
cgggaagctcgctacatgtatctgggagagcgcagcaccctgatggccctgcggggccag
gaccggggcaagagcggctctttggggcgcaagtacaccgacaaccgcttcttcggccac
ctttccttcatcaagcccaaagagctgaagcgcaccttcaaggcagcgctgaaggagggg
tatctcgagccgaagggcgcatacgagggcagcccgctttacgggcttaccgagcgaggc
cgggcccgccacgagcgccggctgaggcaggaggtggcgcatggaggagcttga
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integrated database retrieval system
