Mesoplasma syrphidae: CXP39_03505
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Entry
CXP39_03505 CDS
T05255
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
msyr
Mesoplasma syrphidae
Pathway
msyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CXP39_03505 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyr03019
]
CXP39_03505 (rnr)
03016 Transfer RNA biogenesis [BR:
msyr03016
]
CXP39_03505 (rnr)
Enzymes [BR:
msyr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CXP39_03505 (rnr)
Messenger RNA biogenesis [BR:
msyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CXP39_03505 (rnr)
Transfer RNA biogenesis [BR:
msyr03016
]
Prokaryotic type
tRNA degradation factors
CXP39_03505 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
Pox_RNA_pol
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AUF83831
UniProt:
A0A2K9BKT7
LinkDB
All DBs
Position
complement(812547..814664)
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AA seq
705 aa
AA seq
DB search
MEKKIVEILQQNNNKMAFDLLANKMKATDHMAFLEMLTMMSEENVIAISPANNIYLLDDG
HYMHGILKLNAKGFGFVSNLNDSGHEDYFVPPISLNGTFTNDEVVYTVKTESDGRLRAEI
LELIKREKTSIMGEITKSRDGRFLDFIPMDKTFSNFRVIMVNKADFILKDNLIVKAKILE
LKDRKLFVRIKKIVGDATKAADRIISIAEELDIRTEFPKRVLDNAEEVNIPLKQQSELIK
KRLKRSLLKKMVVTIDGIDSKDLDDAIHVEKVSNGHFKLIVAIADVSHYVQPKSALDNEA
LLRGNSTYLANKVIPMLPRILSDDLCSLNPNTEKLALACEMEFDASGKMLSKEVYETVMI
SKVRLNYSEVNEYFDNKKWNHCEESRIMMDVAFELYKLIDAIKIKRGTINFGVREAKVVM
DKDSNVVEIKARETGESEQLIEQFMVSANEAVAEIVFDRELPFVYRNHGKPEEQDLITWY
TSLKSFGIDPKLTPKEMLDPLNINKTLLQIDNQTTDPVEKELLNLSLLRYMDKAKYSLEN
IGHFGLSSKCYTHFTSPIRRYSDLMVHRYLKQYILNKDTRDFMLEKNIAFIDKACAIIND
TEITSVECEREVVKACMVEYMADKVGNIYEGTIAVALKFGIFVQLENMVEGLVHISNLEE
GIVYDESNQVLIKKDNTFYRMGQKVNVKVIGADIKKRTIDFQIVK
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaagattgtggaaatattgcagcaaaataataataaaatggcatttgattta
ttagcaaataaaatgaaagcaacagatcacatggcattcttagaaatgttaacaatgatg
agtgaagaaaatgtaatagcaatttctcctgcgaataatatttatttgttagatgatggt
cactatatgcatggaattttaaaactaaatgcaaaaggatttgggtttgtatcaaattta
aatgattctgggcatgaagactattttgttccgccaataagtttgaatggaacttttaca
aatgacgaagttgtgtatacagttaaaactgaatcagatggacgtttacgtgctgagatt
ttagaattaattaagcgcgagaaaacttcaattatgggagaaattacaaaatctcgtgat
ggtaggtttttagatttcattccaatggataaaacattttctaattttagagtaatcatg
gttaataaagctgattttattttaaaagacaatttaattgttaaggcaaagattttagaa
ttgaaggatcgtaaactgtttgttagaattaaaaaaattgttggagatgctactaaagca
gcagacagaatcatatcaattgctgaagaactagatattcgtacggaatttcctaagcgt
gttttagataatgctgaagaagttaacattccattgaaacaacaatcagaactaattaaa
aaacgtttgaagcgttcacttttaaagaaaatggttgtaacaattgatggaattgattca
aaggatttggatgatgctattcatgttgaaaaagtgtctaatggtcactttaaattgatt
gtagcaattgctgatgtttctcattacgttcaacctaaatcagcattagataatgaagca
ttactaagaggaaattcaacgtatttggcaaataaagtaattccaatgctgccaagaata
ttatcagatgatttatgttcgctgaacccaaatactgaaaaattagctttagcatgtgaa
atggaatttgatgcttctggaaaaatgctttcaaaagaagtctatgaaacggttatgatt
tcaaaggtgcgattaaattatagcgaagttaatgaatattttgataacaaaaagtgaaac
cattgtgaagagtcacgtataatgatggatgtggcttttgaactgtacaaattaattgat
gcaataaaaataaagcgaggaacaattaattttggggttcgtgaagcgaaagttgttatg
gacaaagattcaaatgttgttgaaattaaagcacgtgaaactggagaatcggaacagcta
attgaacagtttatggttagtgccaatgaagccgttgcagaaattgtttttgatcgtgaa
ttaccatttgtatatcgtaatcatggtaagccagaagagcaagatctaattacctgatat
acatcactaaagtcttttggaattgatccaaagttaactccaaaagaaatgcttgatccg
cttaatattaataaaacactgttgcaaattgataaccaaacaactgatccagttgaaaaa
gagttattaaatttatcgttgctacgttacatggataaagctaaatatagtttggaaaat
attgggcattttggattgtcaagtaaatgttatacacattttacttcaccaattcgtcgt
tatagtgatttaatggtacatcgctatttaaaacaatatattctgaataaagatactcga
gattttatgctagaaaaaaatattgcatttattgataaagcatgtgcaataattaatgac
acagaaataacttcagttgaatgtgagcgtgaagttgttaaagcttgtatggttgaatat
atggctgataaagtaggaaatatttacgagggaacaattgcagtagctttaaaatttgga
atctttgtacagctagaaaatatggttgaggggctagttcatatttcaaatcttgaagaa
ggcattgtttatgatgaaagtaatcaagtcttaattaaaaaagataatacattttacaga
atgggtcaaaaagttaacgtgaaagtcattggagcggacattaaaaaaagaacaattgat
tttcaaatagtaaaataa
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