Mycolicibacterium neoaurum NRRL B-3805: MyAD_20210
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Entry
MyAD_20210 CDS
T05013
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
myn
Mycolicibacterium neoaurum NRRL B-3805
Pathway
myn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MyAD_20210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myn03019
]
MyAD_20210
03009 Ribosome biogenesis [BR:
myn03009
]
MyAD_20210
Enzymes [BR:
myn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MyAD_20210
Messenger RNA biogenesis [BR:
myn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MyAD_20210
Ribosome biogenesis [BR:
myn03009
]
Prokaryotic type
rRNA helicases
MyAD_20210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
HEM4
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AMO07103
LinkDB
All DBs
Position
complement(4333011..4334705)
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AA seq
564 aa
AA seq
DB search
MTSIDEPSPAPELTFADLQIHPSVLQAVTEVGYESPSAIQAATIPPMLAGSDVVGLAQTG
TGKTAAFAIPILSKIDAGSRNTQALVLAPTRELALQVAEAFGRYGAHLSVNVLPVYGGSS
YGPQLSGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERIL
ADTPEYKQVALFSATMPPAIKKITSKYLHDPVEVTVKAKTQTAENITQRYLQVSYPRKMD
ALTRLLEVEEGDAMIVFVRTKQATEEVAEKLRARGFAAAAINGDIAQAQRERTIASLKSG
AIDILVATDVAARGLDVERISHVVNYDIPHDPESYVHRIGRTGRAGRSGNAMLFVTPRER
HLLSSIERVTRQKLVEIQLPSVDDVNAQRVQKFRDSISESLNSPGIDLFRRLIEDYERDN
DVPLADIAAALALLSRDGEAFLMTEPPPEKRKERPDRDDRGAREDRPRKKHSTRTDLATY
RIAVGKRHKVAPGAIVGAIANEGGLNRSDFGHIAIRVDHSLVELPAKLPREVYKKLENTR
IQGVLINLQPDRGSGTSKPRRKDS
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgatcgatgaacccagccccgcccccgaactgacctttgctgacctgcagatt
cacccgtctgtgctgcaggccgtcacggaggtcggctacgagtcgccttcggcgatccag
gcggccaccatcccgccgatgctggcgggctccgatgtcgtgggcctcgcccagaccgga
acaggtaagacggcggccttcgccatcccgatcctgtccaagatcgacgccggcagccgc
aatacccaggccctggtcctggccccgacgcgggaactggcgctgcaggtcgccgaggcc
ttcggccgctacggcgcacacctgtcggtcaacgtgctgcccgtgtacggcggctcgtcc
tacgggccgcagctgtccggtctcaagcggggtgcgcaggtggtcgtcggcacgccgggt
cgcgtcatcgaccatctggagaagggcagcctggacctctcgcatctggattacctggtg
ctcgacgaggccgacgagatgctgcagatgggcttcgccgaggatgtcgaacgcatcctg
gccgacacccccgagtacaagcaggtcgcgctgttctcggcgaccatgccgccggcgatc
aagaagatcacctccaagtacctgcacgatccggtcgaggtcactgtcaaggcgaagacg
cagaccgccgagaacatcacccagcgctacctgcaggtgtcctacccgcgcaagatggat
gcgctgacgcggctgctcgaggtcgaagagggcgacgcgatgatcgtgttcgtccgtacc
aagcaggccaccgaggaggtcgccgagaagctgcgtgcgcgtggtttcgccgcggccgcc
atcaacggtgacatcgcgcaggcccagcgtgagcgcaccatcgcctcgctcaagagcggt
gccatcgacatcctggtcgcaaccgatgtcgcggcccgcggcctggatgtcgaacgcatc
agccacgtggtcaactacgacatcccgcacgacccggagtcctatgtgcaccgcatcggg
cgcaccggtcgcgccgggcggtcgggcaacgccatgttgttcgtgacaccccgcgaacgg
cacctgctcagttcgatcgagcgggtcacccgtcagaagctcgtcgagatccagcttccg
tcggtggacgatgtcaacgcccagcgtgtccagaagttccgcgactcgatcagcgaatcg
ctcaactccccgggcatcgacctgttccgccgcctcatcgaggactacgagcgtgacaac
gatgtgccgttggccgatatcgccgcggcgctggcgttgttgtcccgtgacggcgaagcg
ttcctgatgaccgagccgccgccggagaagcgcaaggagcgccccgaccgcgatgatcgg
ggtgcccgtgaggaccgcccgcgcaagaagcacagcacccgcaccgatctggcgacctac
cgcatcgcggtgggcaagcggcacaaggtggcgcccggcgcgatcgtcggggcgatcgcc
aacgagggtgggctgaaccgcagcgatttcggtcatatcgccattcgggtcgaccactcg
ttggtggagctgccggccaagttgccgcgtgaggtgtacaagaagctggagaacacccgg
atccagggtgtgctgatcaacctgcaacccgaccgcgggagcggcaccagcaagcctcgc
cgcaaggactcgtga
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