Maylandia zebra (zebra mbuna): 101470101
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Entry
101470101 CDS
T02814
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X2
KO
K16617
collagen type XIII alpha
Organism
mze
Maylandia zebra (zebra mbuna)
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mze00536
]
101470101 (col13a1)
Glycosaminoglycan binding proteins [BR:
mze00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101470101 (col13a1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101470101
NCBI-ProteinID:
XP_012780543
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All DBs
Position
LG13:1643718..1756262
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AA seq
668 aa
AA seq
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MSEMEQEKKWGVAGKPGEKRRVGLKQPLWRDLSCVTFCIAVSVLSVGVWIVVFVRTSELQ
SRIVSLEQQRLSAWMLSVEQVEPVILGRLDQILEEKLAARLPKTRDVREVSHSCLCPPGP
PGPPGRAGFPGGKGSMGIPGRMGLKGHAGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGFP
GPIGLDGKPGQSGPKGDMGQRGPKGHPGEPGPKGEKGICGDYTHRKRRIVQPCVGQLATQ
GEPGIQGPAGPPGPPGPPGTPGSDGANGPPGKPGEPGKPGKDPRLLPGLKGEPGVPGQKG
DRGDVGPAGPKGVGGDQGNKGEKGELNTGAPGIKGEPGSPGLPGLRGPRGEAGIQGPAGP
RGLPGPTGEPGRAEIQYENDIRNIPLMGPPGLPGPPGTPGIPGAKGEVGLPGPPGLDGEK
GPRGKPGEPGLLGPAGPEGPRGEGGVMGFPGPKGTKGDMGPSGSPGPKGEPGDGGRLESI
YGPPGPPGPAGPAGPQGPSGPKGEPGIGIRGEKGATGQKGDKGDRGHLGLPGLVGPAGVP
GPAGPKGETGEKGDPGIPGPTGPQGIPGLVGPQGLKGNQGERGKKGNRGAKGDKGDQGAP
GLDAPCPLGDDGLPVPGCWNKIPPLASLKALHTLGPWLNELHDVVTQNGFTSQVCLVRVH
LWNFLPSL
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaatggaacaggaaaagaagtggggagtcgctggtaaaccaggtgaaaagagg
cgcgttggcttgaagcagccgctgtggagagatttgtcttgcgtgacgttttgcatcgcg
gtgtccgtgctgtctgttggagtttggatcgtagtgtttgtgcggacgtcggagctgcag
tccaggatagtaagtctggaacagcagcggctttctgcgtggatgctgtccgtggaacag
gtggagcccgtcatcctgggtcgtctcgaccagatcctggaagaaaagcttgcagcgcga
ctaccaaagacgcgggatgtgagagaagtttcccacagctgcctgtgtcccccaggacct
ccaggtcctcctggacgagcaggctttccgggtggcaaaggaagtatgggaattcctggg
agaatgggcttaaaaggacacgcaggggagaagggagcaccaggtgagcctggcctgtct
atcattggaccaagaggacctcctggacaacctggtacaagaggatttccaggatttcca
ggtccaattgggttagatggcaagcctggacagagtggaccaaagggagacatgggacag
cgtggtcctaaaggacacccaggggaacctggacctaaaggggagaagggtatctgtggc
gattacacacatcggaagcgacgtattgtacagccctgtgttggacagttggccacacag
ggcgagcctggaatacaggggcctgcgggacctccggggccacccggtccaccgggaaca
ccgggatcggatggggccaatggcccaccgggtaaacctggagagccaggcaaacctgga
aaagacccaaggctcttgcctggactaaagggtgagccaggtgtgccaggacaaaagggg
gatcgaggtgatgttggcccagcaggcccaaagggagttgggggagaccaaggaaataag
ggagagaaaggagagctgaacactggagccccgggaattaaaggagagcctggttcacca
ggactgccgggactaagaggacccagaggggaagcaggtattcaaggcccagctggccca
aggggtctgccaggcccgactggggagccaggaagggctgaaatccagtatgaaaatgat
atccgcaacatccccctgatgggccctcctggattacctggacctccagggacacctgga
atccctggagccaagggtgaagttggtctaccaggtccaccaggactggatggagagaag
ggacctcgagggaagcctggagaacctggtctcctgggcccggcaggtcctgaaggtccc
agaggagagggaggtgtcatgggctttccaggacccaaaggcaccaagggtgacatgggt
ccatctggatcacctggtccaaaaggtgaacctggagatggaggaaggttagaatcgatc
tatggtcctccaggacccccaggaccagctggcccagcaggaccacaaggaccatcgggg
cctaagggagagccaggaattggaatccgaggagaaaagggagcgacgggtcagaaaggc
gacaagggagacagaggccatcttggacttcctggtctagtaggacctgcaggtgtgcca
gggccagcaggaccaaagggagagacaggtgaaaagggtgatcctggaattccaggacca
acagggccgcaaggcatccccggattagtaggaccacagggactcaagggaaatcaggga
gagaggggcaagaaaggcaacaggggggccaaaggggataagggagaccaaggagcacct
ggattagatgccccctgtccattgggagatgatggtttacctgtacctggatgttggaat
aaaatcccaccccttgcctcgctgaaagccctgcatacccttggcccttggctcaatgaa
cttcatgatgtagtcacccaaaatggtttcacttcacaggtgtgccttgtcagggttcat
ttgtggaatttcttgccttccttatga
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