Maylandia zebra (zebra mbuna): 101470695
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Entry
101470695 CDS
T02814
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03015
mRNA surveillance pathway
mze03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101470695 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101470695 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mze03019
]
101470695 (cpsf6)
Messenger RNA biogenesis [BR:
mze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
101470695 (cpsf6)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
101470695
NCBI-ProteinID:
XP_004548288
UniProt:
A0A3P9BKY9
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Position
LG17:25330583..25344952
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AA seq
586 aa
AA seq
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MADGVDHIDIYADVEEEFSQEADYPVHEQIDLYDDVISPSANNGDAPEDRDYLDSLPAPG
GTEGGKSALPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAIRVIGITDVLEIKFFENRAN
GQSKGFALVCVGSEASSRKLMELLSKRELHGQNPIVTPCNKQSLSQFEMQSRKSTQTGQM
SGEGKAGPPGSGPRGGFPMGSRGRGRFPGPPGPGGDRFPGPVGPGGPPPHLPGSGMRPDL
VRHQDGPLMDMSFNPFQPGGRNGSWRSRGGMQGPPRPPPGPPGPPGPPGPPPPGQGLPPP
MAGPPNRGDRPPPPVLFPGQFGQPPLGPLPPGPPPPGYGPPPGPPPPQQGPPPPGPFPPR
PPGPIGPPMALAPPPHLPGPPPGGPPPAPHVNPAFFPPPGNNSMPPNDSRGPPGPNDPYG
RPPPYERGDYGPGGRDMDTSRTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAI
ETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSASRRERSRERDHSRSREK
SRRHKSRSRDRHEDYYRERSRERDRHRERDRDRDREREREREYRHR
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggatcatatcgacatctacgccgacgtcgaggaggagttcagccag
gaagctgactacccagttcatgagcagatcgacctgtatgatgacgtaatatccccatca
gccaataatggtgatgctccagaagaccgggattacttggattcactgccagccccaggt
ggcacagagggagggaaaagcgccctgcccaacgtggtgtacacctacactggaaaaaga
atcgccctgtacataggaaacctcacatggtggacaactgatgaggacttgacagaagct
atccgggtgataggcatcacagatgtgctggagataaagttctttgaaaaccgagccaat
ggccagtcaaaagggtttgctctggtgtgtgttggttcagaggcatcctccagaaagtta
atggagctgctgtcaaagagggagctccatggtcagaatcccattgtcacaccatgcaac
aagcagtccctcagccagtttgaaatgcaatcacgcaaaagtacccagacaggtcagatg
tctggggaaggaaaggctggtcctcctggttctggaccccgtggcggttttcccatgggc
agccgagggagaggcaggttccccggaccacctggccctggaggagaccgcttccctggt
cccgtagggcctgggggtcctccaccacaccttcctggctcgggcatgagaccagatctg
gttaggcaccaagatggccctctgatggatatgagtttcaatcccttccagccggggggc
aggaacgggagctggcgtagcagaggtggcatgcagggtcctccacgccccccacccggt
ccaccaggtcccccaggacctccaggacctccacctccaggccagggtcttccacctccc
atggctgggcctccaaatcgtggtgataggcctcctccacctgttctcttccctgggcag
tttggccagccaccactgggacccctgcctccaggtccacctcctccaggctatggtcct
ccacctggtcccccacctcctcagcagggcccaccccctccaggaccctttccaccccgt
cctcctggacctattggcccgcctatggcattggctccaccaccacatctgccaggtccc
ccgccaggtggcccaccaccagcgccgcacgtgaaccctgccttctttcctccccctggc
aacaacagcatgccacccaatgatagccgaggtccaccgggaccaaatgacccatacggc
cgcccaccaccatatgaaagaggagattatgggcctggaggccgggacatggacacatca
cgaacccctctaagtgaggcagagtttgaggagatcatgaacaggaacagagccatatcc
tccagtgccatatctagagcagtttctgatgccagtgcaggtgattatggcagtgctata
gagactttggtgacagccatcagtctgattaagcagtccaaagtgtccgcagacgaccgc
tgcaaggtcctcatcagttctctgcaggactgtctccacggcattgagtcaaagagctat
ggctctgcgtcaaggcgagaacgttccagggaacgtgaccacagtcgctcaagagaaaag
agtcgacgacacaaatctcgtagccgcgacaggcatgaggactattacagagaacgcagt
cgggagagagatcgtcatcgtgagagggatcgggaccgtgaccgggaaagagagagggag
agggaataccggcaccgttag
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