Candidatus Nucleicultrix amoebiphila: GQ61_07615
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Entry
GQ61_07615 CDS
T04833
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
naf
Candidatus Nucleicultrix amoebiphila
Pathway
naf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
naf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GQ61_07615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
naf03400
]
GQ61_07615
Enzymes [BR:
naf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GQ61_07615
DNA repair and recombination proteins [BR:
naf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GQ61_07615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SecA_DEAD
MFD_D3
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ARN85173
UniProt:
A0A1W6N5N6
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All DBs
Position
complement(1491675..1495160)
Genome browser
AA seq
1161 aa
AA seq
DB search
MPVQSKSEPITVINCPSDLEPFLLGYSPFKERFLVYVSLDDSDLFDRAQLFRFIDPQRPV
LLFPTWDTLPYDRISPRQDIIGERSATLSLLEQGVAPNTIIMTSLAAILQRIPPQENFQG
FGLTLHKGKNISRQELTMRLEAQGYHRVEIVREPSEYALRGNLVDVFPAHSLHPYRLDFF
GDELETLKAFDPLSQRSAGEEAELKLLPSKELSLTPQTIARFRQGYRATFLDTTDQDPLY
ESVSAGRPYPGMEQWLPLFYSKLSTLQDYLPADALWCFDAHFNEAALARFEQIQEHYQAR
KAYLKESKKLGDGFIYHPLPPEQLYLSAKEFEDLTKKNSTIEFHSFQTQASSEENILDCQ
ARRAKDFHLERNSPDINVFEALKEHIQSLQNLGDKVLITAPSFGAISRLETALKDHGFIS
TRQINDLKSLEDVPHTILGLCVLPLDHGFSLGGFSVLTEQDILGDKQTKTTKRRRRSDLF
LGEASNLTTGDYVVHMDHGIGQYTGLMTLTINDLPHDCLALIYEGGDKLFVPVENIEVLS
RYGGEDSFVVLDRLGSASWQARKARVKKNLLEMASGLIKIAAERQLENAESYKIEPGQFN
EFCARFPYTETEDQLIALDETLEDLSAGKPMDRLICGDVGFGKTEIAIRAAFVVASQGKQ
VAIIAPTTLLARQHYQNFQRRFQGFGLKVAQLSRFTTPKDASLIKEGIKDGTIQVVIGTH
SLLGKGIHFLNLGLMIVDEEQHFGVKQKEHLKSLQANVHVLTLTATPIPRTLQMALTGVR
DMSIIATPPVDRLAVRTFVMPFDGVMIREAILREKYRGGQIFYVTPRIEFLEKIQLQLQE
LVPEIKVAMAHGQLPPRALEKTMLDFCDGRYDLLLATNIIESGLDIPTVNTIIVDRADLF
GLAQLYQIRGRVGRTKIRAYAYLLLPPTALSTTSQKRLEIMQTLDNLGAGFQLASHDMDI
RGAGNLLGDQQSGHIREVGIELYQQMLEEAVEEARNRQGNKAAEPAVDHWTPQLNLGLPV
LIPEHYVHDLTVRLHLYQRLVHLNAPAEIEDFAIELIDRFGPLPLEVTYLLEIIYLKTLC
RAANIDKVDIGDKGIVLGFYKNSFPNPEGLITMIQNSQGTIRLRPDQKLVYIHTWSDIDQ
RLKGIKTILEELKSLAEKKSF
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttgcctgttcagagtaaatctgaaccgattacagtaattaattgtcccagtgaccttgaa
ccctttttattgggatattctccctttaaagagcgttttttggtttatgtatctttggac
gactccgatctatttgatagagcgcagttattccgttttatagaccctcaacgtccggtc
ctgctttttccaacctgggatactttgccctatgatcgtatttcacctcgtcaagatatt
ataggagaacgatctgcaaccttaagccttcttgaacagggggtggcccctaatacaatt
attatgacgagcttagcggcaattctacagcgcatccctccccaagaaaacttccaagga
tttggattaacgcttcataagggaaagaacattagtcgccaagagctgacaatgcgcctt
gaagctcaaggctaccatcgcgtagaaattgtgcgtgaacctagcgaatatgctttacga
ggaaatctcgtagatgtttttcctgcgcacagtcttcacccctatcgactggattttttt
ggagatgagctagaaactttaaaagcttttgatcccttaagccaacgaagcgctggcgaa
gaagctgaattaaaattgttaccgtcaaaagaattaagtcttactccccagacaatagcg
cgttttcgtcaaggttatcgcgcaacttttctcgacacgactgaccaagatcctctttat
gaaagtgtaagcgcaggaagaccctaccccggcatggaacaatggttaccgcttttttat
tctaagctttcgacacttcaagattaccttccagcagatgcactttggtgttttgatgct
cactttaatgaagcggctttggcgcgttttgaacaaattcaagaacattatcaagcacgt
aaagcttatcttaaagaatctaaaaagcttggagatgggtttatctaccaccctctcccc
cccgaacagctgtacttaagtgcaaaagagtttgaagatctcaccaaaaaaaattcaaca
atagagtttcattcttttcaaacgcaagcttcttccgaagaaaatatattggattgtcag
gcacgccgtgcaaaagattttcacttagagcgtaactcacccgacattaacgtatttgag
gctttaaaagaacacattcaatccttacagaatcttggagataaagttctcattacagcg
ccaagttttggggccatcagtcgtcttgaaacagctctcaaggatcatggctttatatca
acgcgtcaaatcaacgatttaaaatctttagaggatgtcccccacacaattttaggactc
tgtgtgcttccccttgaccatgggttttctttaggtggttttagtgttctcacggaacaa
gacattcttggggataaacaaacaaaaacaactaaaagacgcagacgttcagacttattc
cttggcgaagcctcaaacttgacgacgggcgattacgttgttcatatggaccatggcatt
gggcaatatacaggactcatgactttaaccattaatgatttaccgcacgattgcttggct
cttatatatgagggaggtgacaagctatttgttcccgttgaaaacattgaagtactgtca
cgttacggaggagaagacagttttgtcgttctagatcgtttgggaagcgcttcctggcaa
gcgcgcaaagcgcgtgttaaaaagaatcttttagagatggcaagcggtctcattaaaatt
gcagccgaacgacagctggaaaatgctgagagttataagattgaaccaggacaatttaat
gaattttgcgcccgctttccctatacggaaactgaagatcaactcatcgctcttgatgaa
accttagaagatttaagtgcaggaaaacccatggatcgcttgatttgtggggatgtagga
tttggcaaaactgaaattgcaattcgtgcagctttcgttgtcgcaagtcagggaaagcaa
gtggctattatcgccccaactacgcttcttgcgcgacaacattatcagaatttccagcgt
cgttttcaaggatttggactcaaggtcgctcaattatcacgctttacaactcctaaggat
gcaagcttaattaaagaaggtatcaaagacggcaccattcaagtagtgattggcactcac
agtctcttaggaaaaggcatccattttctaaatttaggcttgatgattgtcgatgaagaa
cagcactttggcgttaaacaaaaagaacatctcaaatcactccaagccaacgttcatgtt
ttaacgcttaccgccacccccattccccgtacgcttcaaatggctctcacaggcgtcaga
gacatgagtattatagcgactcctcccgttgatcgcttggccgtgcgcacatttgtcatg
cccttcgatggcgtgatgattcgagaagcgatcctaagagaaaaataccgtggaggtcag
atattttatgtcacgcctcgcatagagtttctcgaaaaaatacaactacaacttcaagaa
cttgttcctgaaataaaagtggcgatggctcatggtcaactcccccccagggctttagaa
aaaacaatgttagatttctgtgatggtcgctatgatcttctcctagccacgaacattatt
gaatcaggactcgatattccaacagttaataccattattgtcgatcgggctgaccttttt
ggtttagcgcaactttatcaaattcgtggacgtgtaggacgcacaaaaattcgtgcctat
gcttacctcttgcttccaccaacagcgttgagcactacctcacaaaagcgtttagaaatt
atgcaaaccttagataatttgggagctggatttcaactcgctagccacgatatggatatt
cggggggctggcaatctcttgggagaccaacaatcagggcatattcgtgaagttggtatt
gaactctaccaacaaatgctagaagaagccgtcgaagaagcgcgtaatcgccaaggcaat
aaagctgctgaacctgctgttgaccattggacgcctcaactgaatctagggctccctgtc
cttattcctgaacattacgtccatgatctcacagtccggctccatctctaccagcgcctt
gtgcaccttaatgctcctgcagaaattgaagattttgcaattgaactcattgatcgtttt
ggcccgctgcctctggaagtcacttaccttttagaaatcatttacctcaaaacactctgt
agagcagccaatatagataaggtagacattggggataagggtattgtccttggattttac
aaaaacagcttccccaatcctgaaggtctgattaccatgatccaaaatagccaaggaaca
attcgtctcagaccagatcaaaagcttgtttacatccacacgtggagcgatatcgaccaa
aggctaaaaggcattaaaactatcctagaggagttaaagagccttgctgaaaaaaaatcc
ttctag
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integrated database retrieval system
