Nocardiopsis alba: B005_2844
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Entry
B005_2844 CDS
T02218
Name
(GenBank) alkA N-terminal domain protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
nal
Nocardiopsis alba
Pathway
nal03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B005_2844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nal03000
]
B005_2844
03400 DNA repair and recombination proteins [BR:
nal03400
]
B005_2844
Enzymes [BR:
nal01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
B005_2844
Transcription factors [BR:
nal03000
]
Prokaryotic type
Helix-turn-helix
AraC family
B005_2844
DNA repair and recombination proteins [BR:
nal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
B005_2844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
DUF6233
Motif
Other DBs
NCBI-ProteinID:
AFR09060
UniProt:
J7LCF8
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All DBs
Position
complement(2963711..2965207)
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AA seq
498 aa
AA seq
DB search
MMDDEQRYRAVHSRDARFDGVFYTAVLTTGVYCRPSCPAITPLRRNVRFYRSAAAAQESG
FRACKRCRPDTVPGSPEWNLRADVVGRAVRLIRDGAVDRGGVGSVAAALGYSERQLNRLL
TGETGASTLALARTERAHTARILVETTDMPMADAAFAAGFSSVRQFNETMRAVYDRSPSR
MREAAAGRATATGSGTITLRLPYRSPIDLEGTLAFLGDRAVPGVEEYTDGIYRRALRLPH
GTGTVELSPGTGRAGGHVACRLRLTDPRDLAGAVRRCRDLLDLDADPEAVADVLGADPIL
GPTLRAHPGVRSPGQVDPAEPAFRAVLGQQVSVRAARTLAGRLVERFGRPLETPDGGLTH
TFPTPEDLAAASPDDLPLTRARSRALVGLAEAIASGRIDLGPGCDRDEAERRLVELRGIG
PWTARYTRMRGLGDPDVFLETDLGVRQALERSGETATPAAARARARDWSPWRSYATHLLW
ASSTGMEERRSREERRGR
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
gtgatggacgacgaacagcgctaccgcgcggtgcacagtagagacgcccgattcgacggg
gtgttctacacggccgtgctcaccaccggcgtctactgccgcccgagctgccccgcgatc
accccgctgcgaaggaacgtccgcttctaccgatccgccgccgcggcccaggaatcgggg
ttccgcgcctgcaagcgctgccgccccgacaccgttcccggttctcccgaatggaacctg
cgggccgacgtcgtgggccgcgccgtccgactcatcagggacggtgccgtcgaccggggc
ggggtgggctccgtggccgccgccctgggctacagcgaacgccagctgaaccgtctgctc
accggcgagaccggcgcgagcaccctggccctggcccggaccgaacgcgcgcacaccgcg
cggatcctggtggagaccaccgacatgccgatggccgacgccgccttcgccgccggattc
tcgagcgtccgccagttcaacgagaccatgcgcgccgtctacgaccgttccccgagccgt
atgcgcgaggcggcggccggccgggccaccgcgaccggctccggcacgatcaccctgcgc
ctgccctaccgaagccccatcgacctggagggcacgctcgccttcctcggggaccgggcc
gtccccggcgtcgaggagtacacggacgggatctaccgacgcgccctccggctcccgcac
ggaaccggaaccgtcgaactctcccccgggaccggccgggccggtgggcacgtggcctgc
cgcctgcgcctgaccgacccccgtgatctggccggcgcggtccgacgctgccgcgacctc
ctggacctggacgccgatccggaggcggtcgccgacgtcctcggagccgacccgatcctg
ggcccgaccctgcgcgcgcacccgggcgtacgctccccggggcaggtggacccggccgag
cccgccttccgcgccgtcctcggccaacaggtctcggtccgagcggcgcgtactctggcg
ggacggctggtggaacggttcggacgtcccttggagacccccgacgggggcctcacccac
accttccccactcccgaggacctggcggcggcgagcccggacgaccttccactgaccagg
gcgcgaagccgggccctggtcggactggccgaggcgatcgcctccggccggatcgacctg
gggccgggctgcgaccgggacgaggcggaacgacggctggtggaactacgcggtatcggt
ccctggaccgcccgatacaccagaatgcgcggactcggcgacccggacgtgttcctggag
accgacctgggggtccgtcaggccttggagaggtccggcgagacggcgacccccgcggcc
gcgcgcgccagggcccgggactggagcccttggcgttcctacgccacccacctgctatgg
gcgtcgtccaccgggatggaagaacgacggagccgagaggaacgacgaggacgatga
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