Nocardiopsis alba: B005_2851
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Entry
B005_2851 CDS
T02218
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nal
Nocardiopsis alba
Pathway
nal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B005_2851 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nal03400
]
B005_2851 (mfd)
Enzymes [BR:
nal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B005_2851 (mfd)
DNA repair and recombination proteins [BR:
nal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B005_2851 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
RecG_dom3_C
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AFR07064
UniProt:
J7L8H1
LinkDB
All DBs
Position
complement(2971035..2974643)
Genome browser
AA seq
1202 aa
AA seq
DB search
MSLTGLLADVSRDPALHSAIETARGGRDPHLDLVAPAALRPFMVGALAADAPVGAARPVL
AVTATEREAADLTDALGSLLPADSVALFPAWETLPHERLSPRSDTVGRRLAVLRRLAHPD
PSDPLTTPLRVVVAPVRSVLQPLVAGLGDLEPVRIRPGDEVSLEEVVDSLTGTGYARVDL
VEKRGDMAVRGGILDVFPPTEEHPLRLEFWGDTVEDIRYFQVADQRSISPEGENHDPRGG
AASGLFAPPCRELLLTDTVRDRARALAEEHPSLAEVLLKIADGVTVEGMEAFAPVLADRM
EPFLTYLAKNAMVVGCDPERIRTRALELEATSAEFLDASWINAASGGEAPIDLGESAYMS
IAELRSIASDLDLPWWGLTPFSAGDEDTGTAEEDDAVVVGAVPADSYRGDTERALADIKG
WLHDNWSVVLVTQGHGPAERLVSMLRDAGLGASRTDDLDRPPKEAVATVTTGLVDHGFLL
RSVHTVVLTETDLVGQRSSTRDMRRMPSRRRGTVDPLQLKPGDYVVHEQHGVGRYLEMVS
RQIQGATREYLLIEYAPSKRGQPGDRLFVPTEQLGEVTRYVGGEAPTLSKMGGAEWSKAK
SRARKVVREIAGDLIRLYSARQASPGHAFGPDTPWQRELEDAFPYVETPDQLAAIDEVKK
DMGRSVPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLVQQHLSTFTERYA
SFPVTIKPMSRFQTDGEVEVTREGLRTGEVDVVIGTHRLLSQETRFKDLGLVIIDEEQRF
GVEHKEALKRLRTQVDVLAMSATPIPRTLEMGLTGIREMTTILTPPEERHPVLTFVGPYE
DKQITAAIRRELMREGQVFFVHNRVASIDKVAASIKRLVPEARVAYAHGQMNEQQLEKVM
VDFWEKNFDVLVSTTIVESGLDVPNANTLIIDRADTYGLSQLHQLRGRVGRGRERAYAYF
LYPPEKPLTETAYERLATVAQHTETGAGMYVAMKDLEIRGAGNILGAEQSGTIAGVGFDL
YVRMVGEAVAELKGDPEAAEEIETKVELPINAHIPHDYVPGERLRLQSYKRIASVTGEED
ILSAYEELTDRYGAPPQPVDNLMAVARFRVLARSAGLADVVMQGNQIRFSPVELRESQEL
RLRRMYPKSIYKESTRTLLVPVPKAGGIGGRPLRDLELLKWCTDLVNAIFEPEKRRPRPP
AE
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgagccttactggacttctcgccgacgtctcccgggacccggccctgcacagcgcgatc
gagaccgcccggggcggccgcgatccccatctcgacctcgtcgccccggcggcactgcgc
cccttcatggtgggcgcgctggcggccgacgcgcccgtgggcgccgctcgaccggtcctc
gccgtcaccgccaccgaacgtgaggccgccgacctgaccgacgcgctgggctcactgctg
cccgccgactcggtcgcgctcttccccgcctgggagaccctgccgcacgagcgcctctcc
cctcggtcggacaccgtcgggcgccggctggcggtcctgcgccgcctggcccaccccgac
ccctcggacccgctcaccacaccgctgcgcgtggtcgtcgccccggtccgcagcgtcctc
caaccactggtggccgggctcggcgacctcgaacccgtacggatccgccccggggacgag
gtgtcgctcgaagaggtcgtcgactccctcaccggcaccggatacgcccgcgtggacctg
gtcgagaagcgcggggacatggccgtccgcggcggcatcctggacgtcttcccgcccacc
gaggaacacccgctgcggctggagttctggggcgacaccgtcgaggacatccgctacttc
caggtcgccgaccagcgctccatcagccccgagggagagaaccacgacccgcgcggcggc
gccgcctccggactgttcgctccgccctgccgtgagctgctgctcaccgacaccgtccgc
gaccgcgcccgcgccctggccgaggagcacccctccctggccgaggtcctcctcaagatc
gccgacggcgtgaccgtcgagggcatggaggcgttcgcccccgtcctcgccgaccgcatg
gaaccgttcctcacctacctggcgaagaacgcgatggtggtgggctgcgaccccgaacgc
atccgcacccgcgccctggaactggaggccaccagcgccgagttcctggacgcctcctgg
atcaacgccgcctcgggcggcgaggcccccatcgacctcggcgaatcggcgtacatgtcc
atcgccgaactgcgctcgatcgcctccgacctcgacctgccctggtggggtctgaccccg
ttcagcgcgggcgacgaggacaccgggaccgccgaggaggacgacgcggtggtcgtgggc
gccgtgcccgccgactcctaccgcggcgacaccgaacgcgccctcgccgacatcaagggc
tggctgcacgacaactggagcgtcgtgctggtcacccagggccacggcccggccgaacgt
ctcgtctcgatgctgcgcgacgccggcctgggcgcgagccggaccgacgacctggaccgg
cccccgaaggaggccgtcgccaccgtcaccaccggcctggtcgaccacggcttcctcctg
cgctcggtacacacggtggtgctcaccgagaccgacctggtggggcagcgctcctccacc
cgggacatgcgccgcatgcccagccgccgcaggggcaccgtcgacccgctccagctcaag
cccggcgactacgtcgtacacgaacagcacggtgtgggccgctacctggagatggtcagc
cgccagatccagggcgccacccgcgagtacctgctcatcgagtacgcgccctccaagcgg
ggccagcccggagaccgcctcttcgtccccaccgaacagctcggcgaggtcacccggtac
gtgggcggcgaggcgcccaccctgtccaagatgggcggcgccgagtggagcaaggccaag
agcagggcccgcaaggtcgtccgcgagatcgccggcgacctcatccgcctgtactcggcc
cgccaggcctccccgggacacgccttcggcccggacacgccctggcagcgcgagctggag
gacgccttcccctacgtggagacgcccgaccagctggccgccatcgacgaggtcaagaag
gacatgggcaggtccgttccgatggaccggctgatctgcggcgacgtcggctacggcaag
accgaggtggccgttcgcgccgccttcaaggcggtccaggacggcaaacaggtcgccgtg
ctggtgcccaccaccctgctggtccaacagcacctgtcgacgttcaccgagcggtacgcc
tccttccccgtcaccatcaagccgatgtcgcggttccagaccgacggcgaggtcgaggtc
acccgcgaggggctgcgcaccggtgaggtcgacgtggtcatcggcacccaccgtctgctc
tcccaggagacccgcttcaaggacctgggcctggtcatcatcgacgaggagcagcgcttc
ggcgtggagcacaaggaggcgctgaagcggctgcgcacccaggtggacgtgctcgccatg
tcggccacccccatcccccgcaccctggagatgggcctgaccggcatccgcgagatgacc
accatcctcacgccgccggaggaacgccacccggtgctgaccttcgtgggcccctacgag
gacaagcagatcaccgcggcgatccgacgcgaactgatgcgcgagggccaggttttcttc
gtgcacaaccgggtggcctccatcgacaaggtggccgcctccatcaaacgcctggtcccc
gaggcccgcgtggcctacgcgcacggccagatgaacgagcaacagctcgaaaaggtgatg
gtggacttctgggagaagaacttcgacgtcctggtctccacgaccatcgtcgagtccggc
ctggacgtgcccaacgccaacaccctcatcatcgaccgcgccgacacctacggcctctcc
cagctgcaccagctccggggccgggtcggacgcggccgcgaacgcgcctacgcctacttc
ctctacccgccggagaaaccgctcaccgagaccgcctacgagcggctcgccacggtggcc
cagcacaccgagaccggcgccggcatgtacgtggccatgaaggacctggagatccgcggc
gccggcaacatcctgggcgccgagcagtccgggaccatcgccggggtcggcttcgacctg
tacgtgcgcatggtcggtgaggccgtggccgagctcaagggcgacccggaggccgccgag
gagatcgagaccaaggtcgaactgcccatcaacgcgcacatcccgcacgactacgtaccg
ggtgaacggctccgtctccagtcgtacaagcgcatcgcgagcgtgaccggagaggaggac
atcctctccgcctacgaggagctcaccgaccgctacggcgccccgccccagccggtggac
aacctgatggcggtggcccgattccgggtcctggcccgctcggcgggcctggccgacgtg
gtcatgcagggcaaccagatccgcttctcccccgtggagctgcgtgaatcccaggaactg
cgtctgcgccggatgtatcccaagtcgatctacaaggagagcaccaggaccctcctggtc
ccggtccccaaggccggcgggatcggcggcaggccgctgcgcgacctggaactgctcaag
tggtgcaccgacctggtgaacgccatcttcgagcccgagaagcgccgtccccggccgccg
gccgagtag
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