Nautilia profundicola: NAMH_1259
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Entry
NAMH_1259 CDS
T00860
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nam
Nautilia profundicola
Pathway
nam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAMH_1259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nam03019
]
NAMH_1259
03016 Transfer RNA biogenesis [BR:
nam03016
]
NAMH_1259
Enzymes [BR:
nam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NAMH_1259
Messenger RNA biogenesis [BR:
nam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NAMH_1259
Transfer RNA biogenesis [BR:
nam03016
]
Prokaryotic type
tRNA degradation factors
NAMH_1259
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
Motif
Other DBs
NCBI-ProteinID:
ACM92594
UniProt:
B9L5L4
LinkDB
All DBs
Position
complement(1157018..1158976)
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AA seq
652 aa
AA seq
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MKEFAYKLVQGIPSKDIPRDKRDIVNDLIALRIVTDSKIIKLKPKYRIGKVDVTKKGFGF
LTPLGVKEKDYLIEAEHLNGAGRGDLVIAEKLFNKKGRPKAKVVYILEKAFSVSVVYLTF
EYKNNKKIPVLRNIKTDLQTYVAEKKKTLKKLPEGAVFKVDNYTNKIIDVLGVLDDPWVD
EKISLALYNKKEEFSKKAIAEAEAYGDYVEKEFYPNRVDLTDLSFCTIDPPTAKDHDDAI
YFDKEKNELYVAIADVSEYVYLNGNIDKEAKERGFSIYFPHKSIPMLPRQLSENICSLKE
QEDRLAFVFKIKLNNKNEVVKEELFEAIIKSKRKYSYDRVDEFLDGRFENTDETDNEILE
WLMPLWEKVKKIRTKRLKTGLDFSSDEIKMTLNEQGLIEKIELEKETPSHKLIEDCMLLA
NKAAAKMIDFGIFRVHEKPSSNSIDELYESLTALGINIDVEEKDFVKVVRDIQKQAKMMG
IEKEVDKLIIRSQQQARYDAKNIGHYALGFEKYTHFTSPIRRYSDLTLHRLLKSIIRNDK
KQMEFILRNIEALVVKISELEREAMKVEWDFYDRKYARYAKEHLNEIYKGIIEDTEIPPI
AKITEDLLLGARVFLKDKKKYNLFEKVDIEIVSSNIATAKIKGKVKQLELEE
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagaatttgcatataaattagtacaaggtataccgtctaaagatataccgagagac
aaaagagacatagttaatgatttaatagcattaagaatagtaactgattcaaaaataatt
aaattaaaacctaaatacagaataggaaaagtagacgtaacaaaaaaaggattcggtttt
ttaactccattgggagtaaaagagaaagattaccttattgaagccgagcatttaaacggt
gccggaagaggggatttggtaattgccgaaaaactttttaataaaaaaggcagacctaaa
gcaaaagttgtttatatacttgaaaaagcatttagtgtaagtgtagtatatttgacattt
gaatataaaaataataaaaaaatccccgtcttgagaaatattaaaactgatcttcaaaca
tatgtggcagaaaagaaaaagacattaaaaaaacttcctgaaggcgcagtattcaaagtc
gataattacactaataaaattattgatgttttgggcgttttagatgatccttgggttgac
gaaaaaatatctttagctttatataacaaaaaagaagaatttagtaaaaaagccatagca
gaagctgaagcttacggggattatgttgaaaaagagttttatccaaaccgtgtagattta
acggacttgtctttttgtactattgatcctcctacagcaaaagaccatgatgacgcaata
tattttgataaagaaaaaaacgaactttatgttgcaattgcagatgtaagtgaatatgtt
tatcttaacggaaatatagataaagaagcaaaagagagaggatttagtatctattttcca
cataaatccatacctatgcttccaagacagttaagtgaaaatatttgttcgcttaaagaa
caggaagacagacttgcatttgtttttaagattaagttaaataacaaaaacgaagttgta
aaagaagagctttttgaagcaataataaagtcgaaaagaaaatattcttatgatagggta
gatgagtttttagacggcagatttgaaaacacagacgaaacagataatgaaatacttgag
tggcttatgcctttatgggaaaaagtaaaaaaaatcagaacaaaacgtttaaaaaccggt
cttgattttagtagtgatgaaataaaaatgacattaaatgaacaaggcttaatagaaaaa
attgaacttgaaaaagaaacaccttctcataaacttatagaagattgtatgcttttagct
aataaagctgcagcaaaaatgattgactttgggattttcagggttcatgaaaagccgtca
tcaaacagtatagacgaactttatgagagtttgacagcattgggaattaatattgatgtg
gaagaaaaagattttgtaaaagttgtaagagatatacaaaaacaagcaaaaatgatggga
atagaaaaagaagttgacaaacttataatccgctctcagcaacaagcaagatatgatgct
aagaatatcggtcattatgcattaggatttgaaaaatatacacattttacgtcacctatt
agaagatattccgatttaactcttcacagacttttaaaatcaataatacgaaatgataaa
aaacagatggaatttatattaagaaacattgaagctcttgtcgttaaaataagtgaactt
gaacgtgaggcaatgaaagtagaatgggacttttatgatagaaaatatgccagatacgca
aaagagcatttgaatgaaatttataaaggtattattgaagatacggaaataccgccgatt
gctaaaatcactgaagatcttttactcggagcaagagtgtttttaaaagataagaaaaaa
tataatctattcgaaaaagttgatatagaaatagtaagttcaaacattgcaacggctaaa
atcaaaggtaaagttaaacagcttgaattagaagagtaa
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