KEGG   Nitrospirillum amazonense: Y958_30480Help
Entry
Y958_30480        CDS       T04935                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nao  Nitrospirillum amazonense
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nao00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    Y958_30480 (ligD)
Enzymes [BR:nao01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Y958_30480 (ligD)
DNA repair and recombination proteins [BR:nao03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Y958_30480 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
4:complement(653219..655777)
Genome map
AA seq 852 aa AA seqDB search
MALETYHKKRDFAATPEPRGRKGRTAGHSFVIQKHDATRLHYDFRLEMDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLDYGDFEGTIPKGEYGGGTVIVWDRGEWSPIGDAHKGYAKGH
LDFELHGEKLGGHWHLVRMHKRPGEKRENWLLIKGEDEAARGEGDPDILEERPESVKTGR
VINEVAGEEPGWSSKTGKIEKKARAPTRKAAPKSAQTPATPALKGAKAGPLPDFVEPALA
TLQAKPPVGERWVHEIKFDGYRLQARVEAGRVKLLTRGGLDWTKKFGKAVPEALAALPVG
KALIDGELVVENAAGASDFSALQADLSEGRSDRFLFYAFDLLYLEDRDLRGVGLERRKAA
LKDLLAEAGDPLRYSEHFDESGGLVLNHACRLSLEGIVSKVRDAAYRPGRGKGWIKSKCG
NRQEFVVAGYVPSTTARRAIGSLVMGVYDEGKLRHVGRVGTGYTVSVAEELFRRLERMRV
QDSPFEDTLTAEERRLVRYVRPELVAEVDFRTWTGDGNIRHAAFRGLREDKDPKDVVREP
AANAPAGTARAVGRAEPKPLLKLSHPDRLYWPDEGVTKAGLADYYTEIWRSIAPFIVGRP
LALLRCPNGIAGEKFFQKHAWKGLSKAIVQVPDPTEPAEGPLIAVNDLDGLLGLVQAAVL
EIHPWGSTLKDWERPDTITLDLDPGEGVAWQAVIDAAREIKDRLEQARLAAFVKTTGGKG
LHVVAPLKPKADWTAVKAFTKGIADAMAADSPDRFVATITKAKRTGKILVDYLRNQRGAT
AVAAYSTRARPGAAVSMPMAWEELSPAIGPAYFTVMTAPTRLAALSADPWADFRAAARPL
EAAKRPARKRAG
NT seq 2559 nt NT seq  +upstreamnt  +downstreamnt
atggcgctggagacctaccacaagaagcgcgatttcgcggccacgcctgagccccggggg
cgcaagggccgcacggcgggtcacagcttcgtcatacagaagcatgacgccacccgcctg
cactatgattttcgcctggaaatggatggcgtgctgaaaagctgggccgtcacccgcggg
cccagcctggtacccggcgaaaagcgcctggccgtccatgtcgaggaccacccgctggac
tatggtgacttcgagggcaccatccccaagggcgaatatggcggcggcacggtcatcgtc
tgggaccggggcgaatggtcgcccatcggcgacgcccacaagggctatgccaagggccac
ctggatttcgagctgcacggggaaaagctgggcggccattggcacctggtgcgcatgcac
aagcggccgggggagaagcgcgagaactggctgctgatcaagggcgaggatgaggcggcg
cggggcgagggcgatcccgacatcctggaggagcggccggaatcggtgaagaccggccgc
gtcatcaatgaggtggcgggggaggaaccgggctggtcctccaaaacgggcaagatcgag
aagaaggcccgcgcgccgacccgtaaggccgcgcccaagagcgcgcaaacgccggcgacg
cccgccctgaagggtgccaaagccggcccgctgccggatttcgtggagccagccctggcc
acgctacaggccaagcccccggtgggtgagcgctgggtgcatgagatcaagttcgacggc
taccgcctgcaggcgcgcgtcgaggcggggcgggtgaagctgctgacccggggcggcctg
gactggaccaagaagttcggcaaggcagtgccggaggcgctggcggcgctgccggtgggc
aaggcactgatcgatggcgaactggtggtggaaaacgcggccggtgcctccgacttttcc
gccttgcaggccgacctcagcgagggccgcagcgaccgcttcctgttctacgccttcgac
cttctctatctggaggaccgggacctgcgcggcgtagggctggaacggcgcaaggcggcc
ctgaaggacctgctggcggaagccggcgatcccctgcggtacagcgagcattttgatgag
tccggcggcctggtgctgaaccacgcctgccgcctgagcctggagggcatcgtctccaag
gtgcgcgacgccgcctatcggccgggccggggcaagggctggatcaagtccaaatgcggc
aaccggcaggaattcgtggtggcgggctacgtcccctccaccaccgcacgccgcgccatc
ggctccctggtcatgggggtctatgacgagggcaagttgcgccacgtcggtcgcgtcggc
accggctataccgtttcggtggcggaagaattgttccgccggctggaacgcatgcgggtg
caagacagcccgttcgaggacaccctgacggcggaggaacggcgcctggtgcgctacgtc
cggccggagttggtggcggaggtggacttccgcacctggacgggcgacggtaacatccgg
catgccgctttccgcggcctgcgggaagacaaggacccgaaagacgtcgtgcgtgaacca
gccgccaatgcgccggcgggcaccgcccgcgcggtaggccgggcggagcccaagcccctg
ctgaagctgagccaccccgaccgcctctattggccggacgagggggtgaccaaggccggc
ttggccgactattacacggagatatggcggtccattgcccccttcatcgtcgggcggccg
ctggccctgctgcgttgccccaacggcatcgccggtgagaaattcttccagaagcatgcc
tggaaggggctgagcaaagccatcgtccaggtacccgacccgaccgagccggcggaaggg
ccgctgatcgcggtcaacgacctggatggcctgctgggcctggtgcaggcggcggtgctg
gaaatccacccctggggttcgaccctcaaggattgggaacggccggacaccataaccctc
gacctggacccgggggagggcgtggcatggcaggccgtcatcgacgctgcgcgcgagatc
aaggacaggctggagcaggcgaggctggcggccttcgtcaagaccacgggcggcaagggc
ctgcatgtggtggcgccgctgaagcccaaggccgactggacggctgtgaaggccttcacc
aagggcatcgccgacgccatggccgccgacagcccggaccgtttcgtggccaccatcacc
aaggccaagcgcaccggcaagatcctggtcgactatctgcgcaaccagcggggcgccacg
gcggtcgcggcctattccacccgcgcgcgacccggtgcggccgtctccatgcctatggcg
tgggaggaactgagcccggccatcggccccgcctatttcacggtcatgacggcacccacg
cggctggctgccctctccgccgacccctgggcggatttccgggcggcggcccggcccttg
gaggcggcaaaaaggccggcgcgaaagcgggccggttag

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