Neoasaia chiangmaiensis: A0U93_05230
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Entry
A0U93_05230 CDS
T04705
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nch
Neoasaia chiangmaiensis
Pathway
nch02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nch00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A0U93_05230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nch03021
]
A0U93_05230
Transcription machinery [BR:
nch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A0U93_05230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Fib_alpha
Motif
Other DBs
NCBI-ProteinID:
AQS87442
UniProt:
A0A1U9KNR0
LinkDB
All DBs
Position
complement(1104724..1106679)
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AA seq
651 aa
AA seq
DB search
MATKTATGTERNAQEQDGDTNVLDTQSGAVKRLIAKGRERGHITFDELNAVLPQDQMSSE
QIEDVMAIFSEMGIQVVENEDQEDGEATEEKEEEAAEADTEEAPTGNVNADSVGRTDDPV
RMYLREMGSVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTFRAIISWHDRLKEGEMLL
RDIVDLEASQGGGNPGEGPEGEGESEEETDDSFEADGGSEDGGDQEGSGLSLSALEEKLK
PDILARFEAIEPLYHKLRKLQVKRIEALTSGEESSDKSEQTYEKLRSELVAMVEMVHLHN
NRIEELVLQLKMQFQRLNGLEGQMLRLAESCRVSRDDFLLKYRGHELDPNWLEVVSALPG
KSWKNFTTKYYERIADLRAQVAELSHGTGLPVGEFRRVYSTVSRGERDTTRAKKEMIEAN
LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI
ADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKE
PISLETPIGDEEDSHLGDFIEDKTAVIPLDAAIQTNLREATTRVLASLTPREERVLRMRF
GIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLDDN
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaagacggccacgggaacggagcggaacgcgcaggaacaggacggcgacacc
aatgtccttgatacgcaatccggtgcggtcaagcggctgatcgccaaggggcgcgagcgc
ggccatattaccttcgacgaactgaacgctgtcctgccgcaggaccagatgtcctccgag
cagatcgaggacgtgatggcgatcttctcggagatgggcatccaggttgtcgagaacgag
gaccaggaagacggcgaggcgaccgaggagaaggaagaggaagccgcggaagccgacacc
gaggaagcgccgacgggcaacgtcaacgctgacagcgtaggccggaccgacgatcctgtc
cggatgtatctgcgtgaaatgggctcggtcgagttgctgtcgcgcgaaggcgaaatcgcc
atcgccaagcggatcgaggccggtcgcgacgagatgatcggcggcctgtgcgaaagcccg
ctgacgttccgtgccatcatttcctggcacgatcgcctcaaggaaggcgagatgttgctg
cgcgacatcgtggacctggaagccagccagggtggtggcaatccgggtgagggtccggaa
ggcgagggtgagagcgaggaagagaccgacgacagtttcgaggccgatggcggcagcgag
gacggtggcgatcaggagggcagcggcctgtccctgtcggcgctggaagaaaagctcaag
cccgatatccttgcgcgtttcgaggcgatcgagccgctgtatcacaagctgcgcaagctg
caggtcaagcggatcgaggcgctgacgagcggtgaggaaagctccgacaagtcggaacag
acctacgagaagctgcgctcggaactggtggccatggtcgaaatggtccatctgcataac
aatcgcatcgaggaactggttctgcagttgaagatgcagttccagcggctgaacgggctg
gaaggccagatgctgcgtctggcggaaagctgccgtgtgtcgcgtgacgacttcctgctg
aagtatcgtgggcacgaactggacccgaactggcttgaggtcgtgtccgcgttgcctggc
aagtcgtggaagaacttcacgaccaagtattatgagcggatcgcggacctgcgcgcgcag
gtggcggagctttcgcatggcacggggctgccggtcggtgaattccgtcgcgtctattcg
acggtttctcgtggcgagcgcgacacgacgcgtgccaagaaggaaatgatcgaggcaaat
ctgcgtctcgtgatctcgatcgccaagaaatacaccaatcgcggcctgcagtttctggac
ctgatccaggaaggcaatatcggattgatgaaggcggtcgataagttcgaataccggcgt
ggctacaagttctcgacgtatgccacgtggtggatccggcaggcgatcacgcgttcgatc
gccgaccaggcgcggacgatccgtattccggtgcatatgatcgagacgatcaacaagctc
gtccgcacgtcgcgccagatgttgcacgagatcggccgcgagccggcgccggaggaactt
gccgagaagctcggcatgccgctggagaaggtgcgcaaggttctcaagatcgccaaggaa
ccgatctctctcgagacgccgatcggcgacgaggaagacagccatctgggtgatttcatc
gaggacaagacggcggtcattccgctggatgccgcgatccagaccaatctgcgcgaggcg
acgacgcgtgtgctggcgtccctgacgccgcgtgaggagcgcgtgttgcggatgcgtttc
ggcatcggcatgaacaccgatcacacgcttgaggaggtcggtcagcagttcaacgtaacg
cgtgagcgtatccgacagattgaggcgaaggcgttgcgcaagctgaagcatccgagtcgc
agccgcaagctgcgctccttcctggacgacaactga
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