Nocardioides dokdonensis: I601_3305
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Entry
I601_3305 CDS
T04431
Name
(GenBank) ski2-like helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:3.6.4.-]
Organism
ndk
Nocardioides dokdonensis
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndk03019
]
I601_3305
Messenger RNA biogenesis [BR:
ndk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I601_3305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
MTR4-like_stalk
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANH39712
UniProt:
A0A1A9GPY3
LinkDB
All DBs
Position
complement(3462346..3465186)
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AA seq
946 aa
AA seq
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MTTDELSPSERYAEFRRTREHPVLKDFRDLYSFPLDDFQLRACREIEEGRGVLVAAPTGS
GKTIVGEFAIHLALATGRKAFYTTPIKALSNQKYHDLVDRYGSDRVGLLTGDNSVNGEAP
IVVMTTEVLRNMLYAGSSTLGGLGFVVMDEVHYLADRSRGAVWEEVIIHLPESVALVSLS
ATVSNAEEFGEWLETVRGETSTIVEEKRPVPLYQHVMVGRRLLDLFASSDVDAAAGFVKE
GAPVNDDLLKIARDDWASSRIKDRRSPRGRSQPGRQGAGKQSGGKQVGNGRRVWIPSRAD
VVDRLDREGLLPAIVFIFSRVGCDAAVQQCLSAGVRLTSPAERAEIHTYVEGACAHLSAE
DLHVLGYHDFLEALTRGVAAHHAGMLPAFKQCVEELYERGLCKVVFATETLALGINMPAR
TVVIEKLSKWNGETHAAITPGEYTQLTGRAGRRGLDTEGHGVVLWQAGMNPRELAGLAST
RTYPLRSSFRPSYNMAVNLVHQFGRHTARELLEQSFAQFQADKAVVGLARQLHKSREALD
GYAEAARCHLGDFMEYAALRRRISDVEKGASKARRDDRRAETVESLRHLKPGDVIEVPTG
KFAGYAVVIDPGWSPEGPRPFVVTLEKQARRLAMVDFPEPIAALTRLKVSRSFNPRNPQM
RRDLAAQLRMRTRDLPPKHLRGTPGAPGRAHAGEPSAWESEVTDLRRQLKAHPCHECPER
EDHSRWSERYFKLDRDAATLARRVEQRTNTVARQFDRVCEVLTALGYLSDDGADAVVTDQ
GRHLMRLYSDMDLVAAESLRLGVWDELTPSELAAALSTLVFEARRPDDATSPRVPGGGAK
KAIGAMVRLWGDLDRLEKDHKLDYLRQPDLGFAWIAYRWCEGDDLDDVLGESELAAGDFV
RWMKQVLDLAGQVAQAAGDSPVRRSARDAIDAMRRGVVAASGLTEE
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccgacgagctgtccccgtcggagcggtacgccgagttccgacgtacccgcgag
caccccgtcctcaaggacttccgcgacctctactccttcccgctcgacgacttccagctc
cgggcgtgccgtgagatcgaggagggccgcggcgtgctggtggccgccccgaccgggtcc
ggtaagaccatcgtgggcgagttcgcgatccacctcgcgctcgccaccggtcgcaaggcg
ttctacacgaccccgatcaaggcgctgtcgaaccagaagtaccacgacctcgtggaccgc
tacggctccgaccgggtcggcctcctgaccggcgacaacagcgtcaacggcgaggcgccg
atcgtggtgatgaccaccgaggtgctgcgcaacatgctctacgccggctcctcgaccctg
ggtggtctcggcttcgtggtgatggacgaggtgcactacctcgccgaccgctcccgcggc
gcggtctgggaggaggtcatcatccacctgcccgagtcggtggcgctggtctcgctctcg
gcgacggtctcgaacgccgaggagttcggcgagtggctggagaccgtgcgcggggagacc
tccacgatcgtggaggagaagcggccggtcccgctctaccagcacgtcatggtcggacgc
cgtctgctcgacctcttcgcctcctccgacgtcgacgccgcggccggcttcgtcaaggag
ggagccccggtcaacgacgacctgctcaagatcgcccgcgacgactgggcatcgtcgcgg
atcaaggaccgccgctccccgcggggacgctcgcagccgggtcgccagggtgccggcaag
cagtcgggcggcaagcaggtgggcaacgggcgccgggtctggatccccagccgcgccgac
gtggtggaccgcctcgaccgcgagggtctgctgccggcgatcgtcttcatcttcagccgg
gtgggctgcgacgccgcggtgcagcagtgcctgagcgccggtgtccgcctgaccagtccc
gccgagcgcgcggagatccacacctacgtcgagggcgcctgcgcccacctcagcgccgag
gacctgcacgtcctgggctaccacgacttcctcgaggccctgacccgcggcgtcgccgcc
caccacgccgggatgctcccggcgttcaagcagtgcgtcgaggagctctacgaacggggc
ctgtgcaaggtcgtcttcgccaccgagaccctcgccctgggcatcaacatgccggcgcgg
accgtggtgatcgagaagctctcgaagtggaacggcgagacccacgccgcgatcacgccg
ggggagtacacccagctcaccgggcgtgccgggcgccggggcctggacaccgagggccac
ggcgtcgtgctgtggcaggcggggatgaacccccgcgagctggcgggcctggcctcgacg
cggacctatccgctgcgctcgtcgttccgtccgtcgtacaacatggccgtcaacctggtg
caccagttcggccggcacaccgcccgcgagctcctcgagcagtccttcgcgcagttccag
gcggacaaggccgtggtcggcctggctcggcagctgcacaagagccgggaggcgctcgac
ggctacgccgaggccgcccggtgccacctcggtgacttcatggagtacgccgcgctgcgc
cgcaggatcagcgacgtcgagaagggcgccagcaaggcgcgccgcgacgaccgccgcgcc
gagaccgtcgagtcgctgcgccacctcaagcccggtgacgtgatcgaggtgccgaccggc
aagttcgccgggtacgccgtcgtgatcgacccgggctggtcgcccgagggaccgcgcccg
ttcgtggtgacgctcgagaagcaggcacgtcgcctggcgatggtcgacttcccggagccg
atcgcggcgctgacacgcctgaaggtgtcgcgcagcttcaacccgcgcaacccccagatg
cgtcgcgacctggccgcccagctgcggatgcgcacccgcgacctgccacccaagcacctg
cgcggcactcccggcgcgccgggacgcgcccacgccggcgagcccagcgcgtgggagtcg
gaggtcaccgacctgcgtcgccagctcaaggcgcacccctgccacgagtgccccgagcgg
gaggaccactcgcggtggtccgagcggtacttcaagctcgaccgcgacgccgccaccctg
gcgcgacgcgtggagcagcgcaccaacaccgtggcccgccagttcgaccgggtctgcgag
gtgctcacggcgctgggctacctcagcgacgacggcgccgacgcggtcgtcaccgaccag
ggccggcacctgatgcgcctgtactccgacatggacctcgtcgccgcggagtcgctgcgc
ctgggcgtctgggacgagctgaccccctccgagctggccgctgccctctcgaccctggtc
ttcgaggcccgccgccccgacgacgccacctcgccgcgggtcccgggcgggggcgcgaag
aaggcgatcggcgccatggtgcggctgtggggtgacctggaccggctcgagaaggaccac
aagctcgactacctgcgccagcccgacctgggcttcgcctggatcgcctaccgttggtgc
gagggcgacgacctcgacgacgtgctcggcgagagcgagctggccgccggcgacttcgtg
cgctggatgaagcaggtcctcgacctcgccggccaggtcgcccaggccgccggcgactcg
cccgtgcgccgctcggctcgcgacgccatcgacgccatgcggcgcggggtcgtggcggcc
tcggggctcaccgaggagtag
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