Nothobranchius furzeri (turquoise killifish): 107375657
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Entry
107375657 CDS
T05163
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04010
MAPK signaling pathway
nfu04020
Calcium signaling pathway
nfu04510
Focal adhesion
nfu04540
Gap junction
nfu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
107375657 (pdgfrb)
04020 Calcium signaling pathway
107375657 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107375657 (pdgfrb)
04540 Gap junction
107375657 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
107375657 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
nfu01001
]
107375657 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
nfu04090
]
107375657 (pdgfrb)
Enzymes [BR:
nfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
107375657 (pdgfrb)
Protein kinases [BR:
nfu01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
107375657 (pdgfrb)
CD molecules [BR:
nfu04090
]
Proteins
107375657 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
VEGFR-1-like_Ig-like
Adeno_E3_CR1
Haspin_kinase
Adeno_E3_CR2
RIFIN
Motif
Other DBs
NCBI-GeneID:
107375657
NCBI-ProteinID:
XP_015799793
UniProt:
A0A8C6M1X4
LinkDB
All DBs
Position
sgr01:24848754..24891181
Genome browser
AA seq
1099 aa
AA seq
DB search
MRRVTASVLQRTVTFTALVLFCAEVSSLEIKPDGKAFVLNRGSTLSLTCSGSREATWAFK
TDDLSQRLREGDEYGRQIYKIAQKNLTSSVLTLRSVSWRHTGVYQCTDVITGETKEAVVF
VPDPEVWFISHHGAVAKTSEESTIPCVVTNPNITVTLHQQDSGRPIRGLYVPGEGFKVAL
EDRMYVCRGELNGELRESQNFNVFSITVPKTIDPYINATKTVLKQGEALTINCTVHGVEL
ADFSWDFPNRELMEVEPQMEYLPIAIMRSWLLFPQVTVAHSGTYECHVIESVVGHTASAS
IHITVLEHGFVDMKPMQHQRISAKLQENVELRVDIEAYPPPQILWTKDGTAIKGDTAILS
RQEHEIRYLTILTLVRVRAEQKGLYAVLVTNGDDTKQVVFDLEVQVPAQIKDLTDHHLPG
QGHLVTCVAEGFPAPIIQWYSCDSMLKCNNQSAVWQPLTPRPEELSIQTNASYNETHKII
QVRSKMVFLKPQHFTVRCETTNRAGLVSRRDVKLVSSTLFSQVAVLAAVLALVVIIILSI
IILVAVWRKKPRYEIRWKVIESVSVDGHEYIYVDPIHLPYDLAWEMPRDNLVLGRTLGSG
AFGRVVEATAYGLTHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLG
ACTKHGPLYLITEYCRYGDLVDYLHRNKHTFLQYYAEKNQEDGCLISRGSTPLSQRKGYV
SFGSESDGGYMDMSKDEPLVYVPMQEQLDSIKYADIQPSPYESPYQQDFYQQQGGTRLDL
VISDSPSLSYDDLLGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARD
IMHDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMN
EIFYSALKRGYRMSKPAHASDDVYNIMKKCWDEKYEKRPEFSLLVHNVGNMLADSYKKRY
CQVDENFMKSDHPAVTRTKPRLSSPFPVANPAFDSPISPLSPANQSQRSGEHWLEADTQE
AINSFNEYIIPIPDPKPEEALPDAPSESPASSLVLEEEADSMSQDTDETLPEEDRLEDTS
EKDALLASTGTPEVEDSFL
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgaggagggtgacagcatccgtgctccagcggacagttacattcacagctttggtgctt
ttctgcgctgaagttagcagcctggagatcaaacctgatggcaaagcgttcgtcctgaat
cgaggctccactctcagcctaacctgctccggatccagggaggcaacctgggcgtttaag
acagacgatctgagtcagcgtctaagagagggagatgaatacggacgacagatttacaaa
attgcgcagaaaaatctgacgtccagtgttctgactctgcggagtgtgagctggaggcac
actggtgtgtaccagtgcactgatgtgatcacaggggaaaccaaagaggcggttgtgttt
gtccctgatcctgaggtgtggttcatcagtcaccacggcgcggtagcaaagaccagtgag
gaaagcaccatcccctgtgtggtcaccaacccaaacatcaccgtcacgctccaccaacag
gacagcggccggccaatcagaggcctgtatgttcctggagaggggttcaaggtggcgctt
gaggacaggatgtacgtgtgtcggggagaactgaacggggaactgagagagtctcagaat
tttaacgtcttcagcattactgtccccaagaccatcgacccctacatcaacgccacaaag
acggtgctgaagcagggcgaagcgctgactataaactgcacagtgcacggagtggagctg
gcagatttttcatgggattttcccaacagggagctcatggaggttgagcctcagatggag
tacctgcccatcgccatcatgcgctcctggctcctcttccctcaagtcaccgtagctcat
agcggcacgtacgaatgccacgtcattgaaagtgttgtaggacacacagcttctgccagc
atccacatcaccgtgctcgaacacggttttgtggacatgaagcccatgcagcatcagagg
atctcagccaagctccaggagaacgtggagctgagggtggacatcgaggcctaccctcct
cctcagattctctggaccaaagacggcaccgccatcaagggagacacagccatcctctcc
agacaagagcatgaaataaggtatctcaccattctcaccttggtgagggtgagggcggag
cagaaaggcctctacgctgtcctcgttaccaacggagacgacacgaagcaggttgtcttt
gacttggaggtccaagttccagctcagattaaagacctgacagaccaccacctcccaggg
cagggacacttagtgacctgtgtagcagaggggtttccagctcccatcatacagtggtac
agctgtgacagcatgctgaagtgcaacaaccagtctgctgtgtggcagccgctgaccccg
cgaccggaggagctgagcatccagaccaacgccagctacaatgagactcataaaatcatc
caggtgcgcagcaagatggtcttcctcaagcctcagcacttcaccgttcgctgtgagacc
accaaccgagccggactggtcagcaggagggatgtcaaactggtgtccagcaccttgttc
tcccaggtggcagtgttggctgctgttttagccttagtggtaatcattatcttgtccatc
atcatcctcgtcgccgtgtggaggaagaaaccacgctatgagatccgatggaaggtgatt
gagtccgtgagtgtggacggacatgagtacatctacgtggatcccatccacctgccctac
gacctggcctgggagatgcccagagacaacctggtcctgggtcgaactcttggatcagga
gcttttggcagggtggtcgaggctactgcatacggtctcacacattcccagtccagcaca
aaggtggctgtgaaaatgctgaaatctacagccaggaggagtgagactcaggctctgatg
tcagagctgaagatcatgagtcacctcggtcctcacctcaacatcgtcaacctgctgggg
gcgtgcaccaaacacggccccctttacctgattaccgagtactgtcgctatggtgacctg
gtggactacctgcacaggaacaagcacaccttcttgcagtactacgctgaaaagaaccag
gaggatggttgcctcatatcaagaggaagcacccctctcagtcagagaaaaggctatgtg
tcctttggaagtgagagtgatggaggatacatggacatgagcaaagacgagcctttggtc
tacgtgcccatgcaggaacaattagactccatcaaatatgcggacatccagccatccccg
tacgaatcgccctaccagcaggacttctatcagcaacaaggtggaaccagactggacctg
gtgatcagtgactctcccagcctctcctatgatgacctcctgggcttcagctaccaggtg
gcaaagggaatggagttcctggcctccaagaattgtgttcatcgagatctggctgccagg
aatgttttgatctgtgaaggaaagctggtgaagatttgtgactttggcctggccagagac
atcatgcatgactccaactacatctccaaaggcagcaccttcctgcctctgaagtggatg
gcaccagagagtattttccataatttgtacaccaccctcagcgacgtgtggtcatacggc
attctgctttgggaaatcttcacactggggggaaccccataccctgatttgcccatgaat
gagatcttctacagcgcgttgaagagaggctaccgcatgtccaaacctgctcatgcctct
gatgacgtctacaacatcatgaagaagtgctgggatgaaaagtacgagaagaggcctgag
ttctccctgctggtccacaatgtggggaacatgctagcagacagctataagaagagatac
tgccaagtcgatgaaaacttcatgaagagcgaccacccagcagtcacccgcaccaaacct
cgactttcatcaccctttccagtcgccaaccctgcgtttgactctcccatctccccactg
agccctgctaaccagagccagaggtctggggagcactggctagaggcagacacacaggaa
gccataaattccttcaatgagtacatcatccccatcccagatccaaagccagaggaagct
ttacctgacgctccatcagaaagccctgcaagctctctggttctggaggaggaggcagac
tccatgtcccaggacacggatgaaactcttccagaggaggaccggttggaggacaccagt
gagaaggatgctctgctggcttctacggggacgcctgaggtagaagacagcttcctgtag
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